Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01851 ATGGAAGATAGAAAGTTTGTGTGCAAATATTGCTTGAAGAGGTTTCCTTGTGGAAAGTCTCTTGGTGGTCACATCAGAACACATATGAGTGAAGAAAGAAACAAtgctgctgcttctgcttctgcttctgcttctgcttctgcttctgctgctgcttATAGTGACATTTTCAAGTTTGATTGTGTGAAAAAGAAGAGAGATTTAGCTTCTGAAGAAGCTGTTGGTGGTAATGGAAATCCAATTTATGGTCTTAGAGAAAATCCCAAGAAAACAACCAGGTTTGTGCATTCTGCAACAACTTTGGAAAATGAAATGATCAAATTCTGCAAAGAATGTGGAAAAGGGTTTCCTTCATTGAAAGCACTTTGTGGTCACATGGCTTCTCATTCTGAGAAAGAGAAAAAGATTGACAAGGAAAAATTGGTTATtgatactgatgaatctgatgatgatgacgacaacgacgacaatactgatgatgatgatgatACTTGTGATACAACAACAACAATGAATCTAAGGAAATCAAAGAGAATGAGGTTCAAGTCTTTAACTTTTTCTAATCTTCAATCTTCTTCTGTTAATGGTTCTTCATCTGTGTCAGAGGTGGAACAGGAACAAGAAGAGGTTGCTATGTGTTTGATGCTTTTGTCTAAAGATTTTAGCCAAAAGGGTCGTTTTGGTTCTGAGTCTTCTGATAATAACTCTGTTGTTTTAGAGACAAAATCAAAAGCTTCTTCTCATGCTGCTGCTAAGATTGTTATCAGGAAAAATGGCAGTAACAAATTTGTGTCTAATAATGATGTTCATGAGTTTGTGGAGAATAAGAAGAAGGTTGTTAAGGATATGAAGTTAAAGTCTGTTGTTGGAATTGGTGTTTCCAATGATTCAGATTCAAGGAATTTTAGATATAGTTCAAAGATTAAATTTTTGGAATCATCCAATGCTTCAAACTGTGAATTCAAGAGGCCAAAAATGGAAGAAGAAAAATCTGGATTTGATGATTTCAGAAGAAGCAAATGCAATGTAACTATGTTTAAGAAATCAGGGGTAAAGGATTTGGATCATAGTGTTAAGAAAAATGAAAGTACAGCAAGAAAAATTGATTCAAGAAAGAAAGATAACTATGAAGAAGGATTTGGCTTTAAAAACAATGAAAAAAGCAATGAGAATGGTAGAAAAAGTTGGAAATATGAGTGTTTTGATAGTGAAAAAAAAGACAATGATTGTTATGATTATTCAACAAGTGAAGAGAGTGATGAAAACAGTTCAGAAAGTGATTCATTTACTGCTGCAAAGTCTCATCATAACAATAAAGCTGTGAAAAGAAAGAAATCAAGCAAAGGTAAGAAGAAGTTGAAGTCAAAGAAGAGCAAAGAATATGAGTGTCCAATTTGCTACAAAATTTTCAGGTCAGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACTTTGGTGATTAAACAAGGTGCTCCATGCTTGATTGATCTTAATCTACCTGCTCCTATTGATGAATAA 1542 0.3113 MEDRKFVCKYCLKRFPCGKSLGGHIRTHMSEERNNAAASASASASASASAAAYSDIFKFDCVKKKRDLASEEAVGGNGNPIYGLRENPKKTTRFVHSATTLENEMIKFCKECGKGFPSLKALCGHMASHSEKEKKIDKEKLVIDTDESDDDDDNDDNTDDDDDTCDTTTTMNLRKSKRMRFKSLTFSNLQSSSVNGSSSVSEVEQEQEEVAMCLMLLSKDFSQKGRFGSESSDNNSVVLETKSKASSHAAAKIVIRKNGSNKFVSNNDVHEFVENKKKVVKDMKLKSVVGIGVSNDSDSRNFRYSSKIKFLESSNASNCEFKRPKMEEEKSGFDDFRRSKCNVTMFKKSGVKDLDHSVKKNESTARKIDSRKKDNYEEGFGFKNNEKSNENGRKSWKYECFDSEKKDNDCYDYSTSEESDENSSESDSFTAAKSHHNNKAVKRKKSSKGKKKLKSKKSKEYECPICYKIFRSGQALGGHKRSHFVGGSEENTLVIKQGAPCLIDLNLPAPIDE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01851 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Car06g01851 513 MobiDBLite consensus disorder prediction 134 169 - -
Car06g01851 513 Pfam C2H2-type zinc finger 109 131 - -
Car06g01851 513 Pfam C2H2-type zinc finger 461 483 - -
Car06g01851 513 Pfam C2H2-type zinc finger 6 31 - -
Car06g01851 513 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Car06g01851 513 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Car06g01851 513 Gene3D Classic Zinc Finger 87 164 - -
Car06g01851 513 MobiDBLite consensus disorder prediction 144 166 - -
Car06g01851 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 461 483 IPR013087 -
Car06g01851 513 MobiDBLite consensus disorder prediction 412 455 - -
Car06g01851 513 ProSitePatterns Zinc finger C2H2 type domain signature. 463 483 IPR013087 -
Car06g01851 513 SUPERFAMILY beta-beta-alpha zinc fingers 4 129 IPR036236 -
Car06g01851 513 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 513 - -
Car06g01851 513 SUPERFAMILY beta-beta-alpha zinc fingers 458 484 IPR036236 -
Car06g01851 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Car06g01851 513 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 513 - -
Car06g01851 513 SMART c2h2final6 461 483 IPR013087 -
Car06g01851 513 SMART c2h2final6 6 28 IPR013087 -
Car06g01851 513 SMART c2h2final6 107 129 IPR013087 -
Car06g01851 513 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01851 Car-Chr6 18390142 18392496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01851 3 513 C2H2 Transcription Factor Family AT1G26610 37.106 1.70e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g01851 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01851 - - cam:101491470 883.634