Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01832 ATGTTGGGTGGGTTATACGGAGACTTACCTCCACCCTCTTCCGCCGAGGAAGATAAACCAACCACCAATGTCTGGTCCTCCAGCACCAAAATGGCCCCCGCCACTCTCCGTAAACCCTCTTCTCTTTTTACTCCTCCTCACACCCTTCTCAGATCCCAAAACAAACCTAAAATCACCAATTCCAAAACTGTTCTATCTCCGGCACCACCGGTACTCGCTCCGGCACTCGATGAAATCGTGCAACCGGCTCTGGTCGGCGTGCAATCCACGGTGTTGGAAGAGTACGATCCGGCAAGGCCCAACGACTACGAGGAGTATCGAagggagaagaagaggaaggctagggaggcggagatgatgagggagctcgagagacggcgggaggaggaggaggagagggagagagagagggaaaaggagagagaaagagaaagagagagggatagagatagggatcagggagaTTCTAGGTTGAATATTTCCGGTGAGGAAGCGTGGAGGCGGCGTGTGGGGATGAGTAGTGGGGGCGGTGGAGGGGCGGTTCCAGTGCCGAGGTCGCCTTCACCGCCGGGGAATGTGGATGGATTTACTATTGGGAAGTCGGAGACTGTTGGATTAGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAAAGGATGATGGCGAAGATGGGTTGGAAGGAAGGACAAGGGCTTGGGAAACAAGAGCAAGGGATCACTACTCCTTTGATGGCTAAGAAAACCGATAGACGAGCTGGGGTTATTGTTAATGCTAGTGATAATAAGTCTGATAAGAAAGTCAAGAGTGTTAACATCAATGGAGTACCTACTAGAGTACTGCTACTTAGAAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTAGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGGACAGTAACTCGAGTTTTGATATTTGAGATAACAGAGCCAAATTTTCCATCCGACGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCTGAAGAAACAACAAAAGCACTAGTTGACCTTGATGGTCGATACTTTGGGGGTAGAATAGTGCGTGCAACATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTAA 1152 0.4288 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSLFTPPHTLLRSQNKPKITNSKTVLSPAPPVLAPALDEIVQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEEREREREKERERERERDRDRDQGDSRLNISGEEAWRRRVGMSSGGGGGAVPVPRSPSPPGNVDGFTIGKSETVGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNKSDKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPSDEAVRIFVQFERSEETTKALVDLDGRYFGGRIVRATFYDEDKFSKNELAPMPGEIPGFT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01832 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 364 IPR000504 GO:0003723
Car06g01832 383 ProSiteProfiles G-patch domain profile. 213 259 IPR000467 GO:0003676
Car06g01832 383 PIRSF SPF45 3 379 IPR040052 GO:0045292
Car06g01832 383 PANTHER SPLICING FACTOR 45 SPF45 1 374 IPR040052 GO:0045292
Car06g01832 383 SMART G-patch_5 211 257 IPR000467 GO:0003676
Car06g01832 383 CDD RRM_UHM_SPF45 276 372 IPR034653 -
Car06g01832 383 MobiDBLite consensus disorder prediction 97 164 - -
Car06g01832 383 MobiDBLite consensus disorder prediction 16 63 - -
Car06g01832 383 MobiDBLite consensus disorder prediction 1 63 - -
Car06g01832 383 MobiDBLite consensus disorder prediction 88 194 - -
Car06g01832 383 SUPERFAMILY RNA-binding domain, RBD 280 367 IPR035979 GO:0003676
Car06g01832 383 Gene3D - 274 372 IPR012677 -
Car06g01832 383 SMART rrm2_1 279 360 IPR003954 GO:0003676
Car06g01832 383 Coils Coil 103 149 - -
Car06g01832 383 Pfam G-patch domain 216 255 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01832 219 254 C2H2 Transcription Factor Family AT5G26610 61.111 1.07e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01832 K12840 - gmx:100800998 482.641