Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01822 ATGGAAAGAAGCGGAGGCCACAACCATAACGGTAATggcagaggcagaggcagaggcagaggcagagacagaggaagaggaagaggaagaggcagaggaagagAGTTTCATCAGCAACACCAATTTCAACAAACTTGGCAACAAAGTCCAAATCCAACTTCATCTTCATCTTCATCTTCAAATCCTCCTCCTATAACTATGCCTCATAACCGTCAACCTCAAGTCCAAACTCGTCCACTTCCATATATTGGAGCTCTAAAAATAAAAGAGCAGCCACCGGAAAATACCAAAATTGGACCTATATACCGGCCTGACAAGGGAGGGACATTGTCGGTTCGATACTACCCACTTCATGTGAATCATTTTCCGGTGGCCTTCAATCCACAAAGTATTATCATGCACTACGATGTGGATGTGAAGGCTACTTTGCCACCGAAAGAGGGTTTGCCTCCGAAGAAGATTTCCAAGTTTGAATTGTCCATGATCAAGGAAAAGTTGTTCGCTGATAATCCTCAGACACTACCTTTGTCGAAGACTGCTTATGATGGACAGAAAAACATCTTTAGTGCTGTGCTATTGCCCGAAGAAACTTTTACTGTCGAGGTCTTAAAAGGAGAAAATGTAAGAGCTGTTTCCTATACAGTTACTATAACGCTGGTGAACACCCTCGAGCTTCACAAGTTGAGAGATTACCTCAATGCTAGAGTGACTTCCATTCCAAGGGATATTTTACAGGGAATGGATTTAGTGGTGAAGGAGAACCCGGCAAGGCGCACTGTTTCTTTAGGACGATGTTTCTTTCCCCCTGAAAATCACATGATGCAGAAGCAACTTCAACCCGGAATAATTGCAGCTGAAGGATTTCAACACAGTCTCAAGACCACTGCTCAAGGTTTATCTTTGTGTCTTGACTATTCGGTTATTTCTTCTCCAAAGCCAATCGGAGTCTTGGAGTTCCTCAAAGAATATATTCGGGGTTTCAATTTGGGTGAGTTTCGTAAATATAAGAAACGTGTCGAGGATGCACTCATTGGATTGAAAGTAAATGTCACTCACAGGACAACCAAACAGAAATACACCATTGCTTCATTAACACCTAAGGATACACGCCACCTTACTTTCACTACTTTGGAGCAAGAGGCCCAAAACCCTCCAGGAAGCACCTCTCTTGTTCAGTACTTTCAAACTAGATATGACAAAGATATTAAACACCAAGATATTCCTGCATTGGTTTTTGGGGGAAAGAAGACTAATTTCGTGCCTATGGAATTTTGTATCTTGGTTGAGGGTCAAAGATTTCCCAAAGAGAAATTGAACTTAAATGCCAACAATTACTTGAAAACTATGTCCTTAGCTATTCCACAGCATAGGAAATCTACGATACAAGGGATGATGAATTCTGGTGATGGACCGTGCGGCGGTGATATTCTTCAGAATTTTGGAATGGATGTCAGCACTTCCATGACAAATGTGACCGGACGCGTAATTGGGCCTCCAATATTGAAGTTAGGTGATCCAAAGGGAAATAGTACTCCTATAAAACTGAACCCAGAGAAATGTTATTGGAATCTAGTTGGAAAGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCATTGATTTTACCAGCAATTTATCTTCTTGGTGCAAATGGAGATTAAGAGACGAACAGTTTGTTCACGATCTTATGGATAAGTACGAAAAGTTGGGCATTGACATGATGCAGCCTGTTTGTTATGAGTATTCTGCAATGTGGAAACTTGGGGATTACAATTCACTATGTGAATTACTTGAAAAAATAAAGGATATGGTTAAAAGAAAATGTCGGCGGCAGCTGCAATTTCTGCTTTGTGTGATGGCCAACAAGGACCCAGGATACAAGTGCCTCAAGTGGATTGCTGAGACTAAGGTTGGCATAGTGACACAGTGCTGCTTATCTGGTAATGCTAATCAAGGGAAAGACCAATATCTCACAAATCTTGCTTTGAAGATCAATGCAAAAATTGGAGGCAGTAACGTAGAGCTCATTAATAGGCTCCCACACTTTGAGGATGAAAGTCATGTTATGTTTATAGGGGCTGATGTCAATCATCCAGGTTCTCGGGACACAGATAGTCCATCAATTGCTGCGGTGGTTGCCACTATTAACTGGCCGGCTGCAAATCGCTATACAGCACGTGTTTGCGCTCAAGAGCATCGGACGGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTTGAGGTTGTTAGATATTATGAGAAGTTAAACAAAGTCAGGCCCCAAAAAATTGTTATATTTCGTGATGGTGTTAGTGAGAGCCAATTTCACATGGTCCTCACTGAGGAGTTACGAGATTTGAGGACAGTGTTTCAGCACTCAAATTACTTCCCAACTATCACTCTTATTATAGCACAAAAGCGACATCAAACTCGATTGTTTCCTATTCATAAGGGGGACAGGAATGGTAATTTCAATGTGTTACCTGGTACAGTTGTGGACACAACGGTGGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGTCACCAGGGAATTCTAGGTACAAGCAAGCCTACTCACTATCATGTCTTGTGGGATGAGCACAAGTTTAGTTCTGATGATTTGCAGAAACTCATATATGACATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAGCTTGTTGGCGCAATCATTACCTATGGCTTCTTCTTCAACTGCGTCAATTTCAAATGATCCCGGGATTTACAAGTTGCATCCTGATACGGAGAACATGATGTTCTTTGTCTGA 2862 0.4032 MERSGGHNHNGNGRGRGRGRGRDRGRGRGRGRGREFHQQHQFQQTWQQSPNPTSSSSSSSNPPPITMPHNRQPQVQTRPLPYIGALKIKEQPPENTKIGPIYRPDKGGTLSVRYYPLHVNHFPVAFNPQSIIMHYDVDVKATLPPKEGLPPKKISKFELSMIKEKLFADNPQTLPLSKTAYDGQKNIFSAVLLPEETFTVEVLKGENVRAVSYTVTITLVNTLELHKLRDYLNARVTSIPRDILQGMDLVVKENPARRTVSLGRCFFPPENHMMQKQLQPGIIAAEGFQHSLKTTAQGLSLCLDYSVISSPKPIGVLEFLKEYIRGFNLGEFRKYKKRVEDALIGLKVNVTHRTTKQKYTIASLTPKDTRHLTFTTLEQEAQNPPGSTSLVQYFQTRYDKDIKHQDIPALVFGGKKTNFVPMEFCILVEGQRFPKEKLNLNANNYLKTMSLAIPQHRKSTIQGMMNSGDGPCGGDILQNFGMDVSTSMTNVTGRVIGPPILKLGDPKGNSTPIKLNPEKCYWNLVGKSMVEGKPVECWGIIDFTSNLSSWCKWRLRDEQFVHDLMDKYEKLGIDMMQPVCYEYSAMWKLGDYNSLCELLEKIKDMVKRKCRRQLQFLLCVMANKDPGYKCLKWIAETKVGIVTQCCLSGNANQGKDQYLTNLALKINAKIGGSNVELINRLPHFEDESHVMFIGADVNHPGSRDTDSPSIAAVVATINWPAANRYTARVCAQEHRTEKILNFGEVCLEVVRYYEKLNKVRPQKIVIFRDGVSESQFHMVLTEELRDLRTVFQHSNYFPTITLIIAQKRHQTRLFPIHKGDRNGNFNVLPGTVVDTTVVHPFEFDFYLCSHQGILGTSKPTHYHVLWDEHKFSSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEASLLAQSLPMASSSTASISNDPGIYKLHPDTENMMFFV 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01822 953 Gene3D - 685 953 IPR036397 GO:0003676
Car06g01822 953 SUPERFAMILY Ribonuclease H-like 600 915 IPR012337 -
Car06g01822 953 MobiDBLite consensus disorder prediction 13 27 - -
Car06g01822 953 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 93 952 - -
Car06g01822 953 SMART DUF1785_2 260 313 IPR014811 -
Car06g01822 953 Pfam Argonaute linker 1 domain 262 306 IPR014811 -
Car06g01822 953 Gene3D paz domain 310 433 - -
Car06g01822 953 CDD PAZ_argonaute_like 313 428 - -
Car06g01822 953 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 93 952 - -
Car06g01822 953 MobiDBLite consensus disorder prediction 1 77 - -
Car06g01822 953 Pfam Piwi domain 617 914 IPR003165 GO:0003676
Car06g01822 953 ProSiteProfiles PAZ domain profile. 314 429 IPR003100 GO:0005515
Car06g01822 953 CDD Piwi_ago-like 476 914 IPR045246 -
Car06g01822 953 SUPERFAMILY PAZ domain 312 466 IPR036085 GO:0005515
Car06g01822 953 ProSiteProfiles Piwi domain profile. 616 915 IPR003165 GO:0003676
Car06g01822 953 SMART PAZ_2_a_3 318 452 IPR003100 GO:0005515
Car06g01822 953 SMART Piwi_a_2 616 915 IPR003165 GO:0003676
Car06g01822 953 MobiDBLite consensus disorder prediction 38 77 - -
Car06g01822 953 Pfam PAZ domain 333 439 IPR003100 GO:0005515
Car06g01822 953 Gene3D - 495 678 - -
Car06g01822 953 Pfam N-terminal domain of argonaute 116 250 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01822 Car-Chr6 18096743 18101212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01822 108 952 Eukaryotic Initiation Factors Gene Family AT5G43810 33.896 2.95e-141 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01822 K11593 - gmx:100805250 1225.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01822 06 18096743 18101212 Car06g01822 06 18096743 18101212 ECH
Car06g01822 06 18096743 18101212 Car07g01645 07 16578386 16580782 PCT