Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01820 ATGCTTTTACAGATTCCGAATTGTTGCATCATCGGGTTAGAATTTCAGATAACAACATTAGATGAAACTATTGAGATGCCACTTTTGGTTGCACTGAGAGAAAGGATTATGGAACATGCCAATAATTTTGAAGCTTTTACTCTGAATCTTGTTCCAAGTATTGATCTTGAGCAGCCACTGCAACTAGCCAAAGTAGCAATTGGACTTGTCTCTTTTCCGGTAAATGGCAAGAGTTTACTCGAGAGCTGTTCTATTTGTTGTGAGGACAAGCCACTGCCAATTATGGTCACCATGAAGTGTCTACACAAGTTCTGTTCGCATTGCTTGAGGGACTACGTTGATAGAAAAGTCCAATCTTGTCGAGCCCCTGTAAGATGTCCTGAACCACGATGCAAGTATTACATATCTGCCTCCGAGTGTAGGTCTTTCCTACCATTCACATTGTTTGAATCTTTTGAGAAAGCACTTGCAGAAGCAAAATTACTCGATTCAGATAGGATTTACTGTCCATTTCCAGATTGTTCTGTTCTCCTTGATCCCCGTAAATGTTTAACAGCCGGGGCTAGTTCATCTAGTCAGACAAAGAGTTCTTGTGTTGAATGTCCTGTTTGCCAGAGGTTTATTTGTATTGGCTGTAAGGTTCCCTGGCATTCATCCATGAGCTGCGAAGAATTTCAGAATCTTCCGGAGGAGGAAAGAAATGCTTCTGACATTACTTTGCATCGCCTTGCTCAGATAAAAAGATGGAAGCGCTGTCAGCAATGTCGTCAGATGATTGAACTTATTCATGGTTGTTACCACATGACATGCTGGTGCGGTCACGAGTTTTGTTATTCTTGTGGTGCTGAATACAGGGAAGGTCGACAGACATGTCAGTGTGTATTTTGGGATGAAGACAACTCCGAAGACTCAGTGTCTCACTCACTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCCATGATCATGGGTGCATATTCTGACCAAGAAAGATCACAACTTGACCTTATTCAAAGGTTTCTAGCTGGAGGTTTAGATCTAAATGAACATCATCCTAACCGATCTCCTCCCCGCCGTACAGAGTCGTATGTTGACCCAATGAAGGATCTACAGCAGTTTCCGTGGCTCGAGAGATTTGTCTCTGTGATAAGAGATGACTATGAAGATTATATTCAATGA 1191 0.4207 MLLQIPNCCIIGLEFQITTLDETIEMPLLVALRERIMEHANNFEAFTLNLVPSIDLEQPLQLAKVAIGLVSFPVNGKSLLESCSICCEDKPLPIMVTMKCLHKFCSHCLRDYVDRKVQSCRAPVRCPEPRCKYYISASECRSFLPFTLFESFEKALAEAKLLDSDRIYCPFPDCSVLLDPRKCLTAGASSSSQTKSSCVECPVCQRFICIGCKVPWHSSMSCEEFQNLPEEERNASDITLHRLAQIKRWKRCQQCRQMIELIHGCYHMTCWCGHEFCYSCGAEYREGRQTCQCVFWDEDNSEDSVSHSLQESEQWAWETFNSLPMIMGAYSDQERSQLDLIQRFLAGGLDLNEHHPNRSPPRRTESYVDPMKDLQQFPWLERFVSVIRDDYEDYIQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01820 396 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 395 IPR031127 GO:0004842|GO:0016567
Car06g01820 396 Gene3D - 220 340 - -
Car06g01820 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 162 IPR013083 -
Car06g01820 396 SUPERFAMILY RING/U-box 235 299 - -
Car06g01820 396 ProSiteProfiles Zinc finger RING-type profile. 83 130 IPR001841 -
Car06g01820 396 ProSiteProfiles TRIAD supradomain profile. 79 297 IPR044066 -
Car06g01820 396 ProSitePatterns Zinc finger RING-type signature. 100 109 IPR017907 -
Car06g01820 396 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 395 - -
Car06g01820 396 Pfam IBR domain, a half RING-finger domain 153 222 IPR002867 -
Car06g01820 396 SUPERFAMILY RING/U-box 81 159 - -
Car06g01820 396 SMART ibrneu5 232 291 IPR002867 -
Car06g01820 396 SMART ibrneu5 150 222 IPR002867 -
Car06g01820 396 SUPERFAMILY RING/U-box 156 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01820 Car-Chr6 18074008 18077696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01820 35 282 C3H Transcription Factor Family AT2G19610 29.344 5.24e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01820 - - gmx:100783040 627.861