Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01778 ATGGAAATCAGTAGCGGCCATAGCAGCAGTAATATGATGTGGTTTTTCAAAGATAGAGGTTTTGATGATAACATCATACAAGTAATGTTCAAAAAGTGCAAGCGTCTTGAGAGGGCTCATCATGACAGAGCAAATGAGAATTGGGAGTATTTGAAAACCATTGGCATTCAAGAAAGGAAACTTCCTTCAATTGTATCCAAATGCCCCAAAATTCTTGTGCTTGGTCTTAATGAGAAGATTGTTCCCATGGTTGAGTGTCTCAAAACACTTGCAACAAAACCTCAAGAAGTTGCCTCTGCCATATCCAAGTTCCCTCACATACTTGCTTGTAGCGTTGAAGAAAAGCTTTGTCCCCTTTTGGCTTTCTTTCAAGCGTTGGGTGTCCCCGAAAAGCAAGTTGGGAAAATTCTACTGCTAAACCCTAGGCTTATCAGTTACAGCATTGAAACAAAGATGGCGGAAATTGTGAAATTCCTTGCAGGCATTGGTCTCGAAAAAGATGGAATAATTGGTAAAATCATCGTCAAGGACCCGTTTATTATGGGTTATAGTGTTGATAAAAGGTTACGCCCTACTTCGGAGTTTCTCAAGTCAATAGGTCTGACTGAACAGGATCTTCAAGTGTTGGCCTTGAACTTCCCATCAATTTTGAGTAGAGATGTGAACAAGGTTTTGGTACCTAATTATGATTATTTAAAGAACTGTGGATTTCAAGGCCGACAGATAGTTGATTTGGTGGTTGGTTTTCCTCCTGTCCTGATCAAGAGCATTCGGAATTCTCTAGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGGAGACAAGTTGATGAAATCATTGATTACCCCTGCTTCTTTCGTCATGGGCTGAAGAGAAGACTAGTGTTGCGGCACAAATTCCTTAAGCAGAGGAATTTAGATTGTAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATGCCTTGAGTAACTAG 1008 0.4048 MEISSGHSSSNMMWFFKDRGFDDNIIQVMFKKCKRLERAHHDRANENWEYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLKTLATKPQEVASAISKFPHILACSVEEKLCPLLAFFQALGVPEKQVGKILLLNPRLISYSIETKMAEIVKFLAGIGLEKDGIIGKIIVKDPFIMGYSVDKRLRPTSEFLKSIGLTEQDLQVLALNFPSILSRDVNKVLVPNYDYLKNCGFQGRQIVDLVVGFPPVLIKSIRNSLEPRIKFLVDVMGRQVDEIIDYPCFFRHGLKRRLVLRHKFLKQRNLDCSLSEMLDCNEKKFHLKFGLLEGHALSN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01778 335 PANTHER CGI-12 PROTEIN-RELATED 11 328 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 Pfam mTERF 14 122 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 Pfam mTERF 93 321 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 Gene3D Transcription termination factor 3, mitochondrial 95 329 IPR038538 -
Car06g01778 335 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 11 328 - -
Car06g01778 335 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Car06g01778 335 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car06g01778 mTERF 3.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01778 K15032 - gmx:100816929 538.88