Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01772 ATGACTAGAAAGAAGGTGAAACTCGCATTCATAACCAATGACTCTGCAAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTTTAATAAAAAAGGTTAGTGAACTTAGCACCCTTTGTGGAATTGATGCTTGTGCTATAATTTATAGTCCCTATGATCTTCAACCAGAGATTTGGCCATCTCCATTAGGAGTTCAAAAGGTGCTTACCAAGTTTCAAAGAATGCCGGAATTGGAGCAGAGCAAGAAGATGGTAAACCAAGAGAGTTTTTTGAAGCAAAGAATCCAAAAGGCCAAAGATCAATTGTCAAAACAAAGAAAGGATAATAGGGAAAAGGAGATGACCCATCTCATGTTTCAAAACCTTAGTGCTGGTAAAATTATGCCCAATATAAGCATGGTTGATTTAAATGATATGGCATGGTTGATTGATCAATACTTGAAAGAAATCAATAGAAGGGTTGAAACATTGGTCAAGAATTCTCAAGGTCAAGCCCAATTGGCACCACTACCAATGGTGACTAATATTGGAATGACTAAGATTGAAGAGAAGGCACAAGGGAGTCATGGTCATGTGTTGGATATGAATATGGATGTCATGCAAAAACAACATTGGTTTATGAATTTGTTGGATGATGATGGTGACACACCTCCTTTGGGAGATGTTAGTCACCAAAATGGATTTTGGCCAAACTCATTTTTCCATTGA 705 0.3773 MTRKKVKLAFITNDSARKATFKKRKKGLIKKVSELSTLCGIDACAIIYSPYDLQPEIWPSPLGVQKVLTKFQRMPELEQSKKMVNQESFLKQRIQKAKDQLSKQRKDNREKEMTHLMFQNLSAGKIMPNISMVDLNDMAWLIDQYLKEINRRVETLVKNSQGQAQLAPLPMVTNIGMTKIEEKAQGSHGHVLDMNMDVMQKQHWFMNLLDDDGDTPPLGDVSHQNGFWPNSFFH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01772 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
Car06g01772 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Car06g01772 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car06g01772 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car06g01772 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g01772 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g01772 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Car06g01772 234 Coils Coil 87 114 - -
Car06g01772 234 PANTHER MADS BOX PROTEIN 2 165 - -
Car06g01772 234 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Car06g01772 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01772 Car-Chr6 17585983 17586687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01772 1 156 Type I MADS-box Gene Family AT5G48670 66.026 2.39e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g01772 SRF-TF 9.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01772 - - gmx:100813231 355.14