Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01770 ATGTCAACAAGTGAGATCAGGAATATGGAAGAAGGTGGATTTAAGGAACTAACTGGAAACGAGGGGGGGTTTTGCGGTTCTCCAGAGGTAGTTCAAGTGATACAAAAGGTAATAGCAGAGGTGATAGGATCATACTTCTTAATATTTGCAGGGTGTTGCTCAGTGGTTTTGAATAAAGTGGAAGGTAGTAAAGGGACAATCACGTTTCCTGGAATTTGTATTGTATGGGGTGTGTCAGTCATGATCTTGGTTTATGCTCTTGGTCATATCTCTGGTGCACATTTCAATCCTGCTGTCACTATTAGCTTCGCCATTTATCGTCATTTCCCACTCAAACAGGTTCCATTGTATCTTATTGCTCAGGTGCTAGGATCTATCCTTGCTAGTGGGACATTATATCTTCTATTCGATGATCTAAATGAAAGTACTTATTTTGGAACAGTACCAGCGGGTTCTGATGTTCAATCTCTTGTCTTTGAGATAATCACATCATTTCTCTTGATGTTTGTTATCTCTGCAGTTTCCACAGACAATAGAGCGATTGGAGAACTGGCAGGGATTGCTGTTGGTATGACGATTATGATAGACGTCTTCATTGCTGGGCCCATCTCAGGTGCATCTATGAACCCAGCGAGGAGCTTTGGACCGGCTTTGGTGATGCACATTTACGATGGATTTTGGATTTATATAGTTGGACCATTTGTTGGTGCCATACTAGGTGCCTCGGCATACAACCTCATTAGATTCACTGACAAACCACTTAAGGAAATAAGCGGTAGCTCAAAGTTCCTCAAAAGCGTTTCTAGAGCAACAAGTTTTCGGTAG 825 0.4182 MSTSEIRNMEEGGFKELTGNEGGFCGSPEVVQVIQKVIAEVIGSYFLIFAGCCSVVLNKVEGSKGTITFPGICIVWGVSVMILVYALGHISGAHFNPAVTISFAIYRHFPLKQVPLYLIAQVLGSILASGTLYLLFDDLNESTYFGTVPAGSDVQSLVFEIITSFLLMFVISAVSTDNRAIGELAGIAVGMTIMIDVFIAGPISGASMNPARSFGPALVMHIYDGFWIYIVGPFVGAILGASAYNLIRFTDKPLKEISGSSKFLKSVSRATSFR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01770 274 CDD MIP 35 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 Pfam Major intrinsic protein 31 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PANTHER AQUAPORIN NIP2-1 20 270 IPR034294 -
Car06g01770 274 Gene3D Glycerol uptake facilitator protein. 23 257 IPR023271 -
Car06g01770 274 TIGRFAM MIP: MIP family channel proteins 39 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Car06g01770 274 PANTHER AQUAPORIN NIP4-1 20 270 - -
Car06g01770 274 SUPERFAMILY Aquaporin-like 32 254 IPR023271 -
Car06g01770 274 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g01770 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01770 Car-Chr6 17539622 17541056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01770 5 268 Major Intrinsic Protein MIP AT5G37810 61.887 4.37e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01770 K09874 - gmx:100819179 396.356