Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01752 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATGCAAGGTCCCAAcggtggggctgctgctgcggccgcagcggcggcggctgctggtgccggtggAAACCAATTCGTGACGACGTCGCTTTATGTCGGGGATCTCGATCCGAATGTCACAGATTCGCAACTGTATGACTTGTTCAACCAAGTGGGTCAGGTTGTTTCTGTTAGGGTTTGCAGGGACTTGACCTCTAGGAGGTCACTCGGTTATGGTTATGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCATCAACAGGCCCATTCGTATTATGTATTCACACCGCGATCCCAGTATCCGCAAAAGTGGTCAAGGAAACATATTTATTAAGAATTTGGACAAGGCAATTGACCATAAGGCGTTACATGATACCTTTTCTACATTTGGAAATATCCTTTCTTGCAAGGTAGCTGTGGATGGATCTGGCCAATCTAAAGGCTATGGATTTGTACAATTCGATAATGAGGAGGCCGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGACAGTACAACTGACAAGGTGAAATTCAACAATGTTTTTGTGAAAAATCTGTCAGAATCAACCACTGATGATGAGTTGAAGAAGATTTTTGGTGAATTTGGGACAATTACCAGTGCTGTAGTAATGAGGGAGGGGGATGGGAAATCAAAGTGCTTTGGTTTTGTAAACTTTGAGAGTACTGATGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGGAAAAAAATTGATGATAAGGAATGGTATGTGGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAACTGAAACTTAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGACGATAGCATTAGTGATGAAAAACTGAAGGAGCTGTTCTCCACTTTTGGTGCCATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTCATGGATATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAGCGGAAAGAAGATAGGAGAGCTAGGCTGCAGGCTCAATTTGCTCAAATGCGTCCTGTCACAATGCCTCCATCTGTTGCTCCTCGCATGCCTATGTACGCCCCTGGTGGTCCTGGTATGGGTCAACAAATATTTTATGGTCAAGGTCCTCCTGCCATCATTCCTTCCCAGCCTGGATTTGGGTATCAGCAACAACTTGTTCCTGGAATGAGGCCTGGAGGGGCTCCTGGGCCAAATTTCTTTGTGCCAATGGTTCCACAGGGACAACAGGGGCAGCGTCCTGGCGGAAGACGTGGAGGTGCAGGCCAGCAGTCCCAGCAGTCACTTCCGCTTATGCCACAGCAGATGCTCCCTAGGGGGCGTGTGTATCGTTATCCTCCTGGTAGGGGCATGCCTGATGGTCCTATGCCTGGAGTAGCTGGAGGCATGTTTTCTGTTCCGTATGATGTGGGTGGGATTCCCCTTCGTGATGCATCTCTTCCCCAACAAATTCCTATTGGTGCTTTGGCTTCGCATCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTCGGTGAGAATCTTTACCCCCTAGTGGAGCAATTGGAGCCCGACAATGCCGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCCCCGGAGGCCCTGAAAGCGAAGGTGGCAGAAGCAATGGACGTCCTTAGGAATGTTGCACAACAGCAGGCTGGCGGTGCTGCTGATCAGCTGTCTTCATTATCACTTAATGAAAGCCTTGTTTCTTAA 1980 0.4576 MAQVQVPPQNAMQGPNGGAAAAAAAAAAAGAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLINRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVAVDGSGQSKGYGFVQFDNEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSTTDKVKFNNVFVKNLSESTTDDELKKIFGEFGTITSAVVMREGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKLKFEQSMKEAADKYQGANLYVKNLDDSISDEKLKELFSTFGAITSCKVMRDPNGISRGSGFVAFSTPEEASRALMDMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVTMPPSVAPRMPMYAPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPGPNFFVPMVPQGQQGQRPGGRRGGAGQQSQQSLPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMFSVPYDVGGIPLRDASLPQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNESLVS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01752 659 MobiDBLite consensus disorder prediction 495 509 - -
Car06g01752 659 CDD RRM4_I_PABPs 320 398 - -
Car06g01752 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Car06g01752 659 CDD RRM2_I_PABPs 125 201 IPR045305 -
Car06g01752 659 SUPERFAMILY RNA-binding domain, RBD 316 415 IPR035979 GO:0003676
Car06g01752 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Car06g01752 659 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Car06g01752 659 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 40 634 IPR006515 GO:0003723
Car06g01752 659 Gene3D - 303 407 IPR012677 -
Car06g01752 659 SUPERFAMILY PABC (PABP) domain 503 651 IPR036053 GO:0003723
Car06g01752 659 SMART poly_2 573 636 IPR002004 GO:0003723
Car06g01752 659 MobiDBLite consensus disorder prediction 480 509 - -
Car06g01752 659 Gene3D - 204 302 IPR012677 -
Car06g01752 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Car06g01752 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 199 IPR000504 GO:0003723
Car06g01752 659 SUPERFAMILY RNA-binding domain, RBD 39 208 IPR035979 GO:0003676
Car06g01752 659 Gene3D - 128 200 IPR012677 -
Car06g01752 659 Gene3D - 33 127 IPR012677 -
Car06g01752 659 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Car06g01752 659 PANTHER POLYADENYLATE-BINDING PROTEIN 28 643 - -
Car06g01752 659 SUPERFAMILY RNA-binding domain, RBD 213 300 IPR035979 GO:0003676
Car06g01752 659 SMART rrm1_1 40 113 IPR000504 GO:0003723
Car06g01752 659 SMART rrm1_1 128 200 IPR000504 GO:0003723
Car06g01752 659 SMART rrm1_1 322 394 IPR000504 GO:0003723
Car06g01752 659 SMART rrm1_1 219 291 IPR000504 GO:0003723
Car06g01752 659 CDD RRM1_I_PABPs 40 119 - -
Car06g01752 659 SMART rrm2_1 128 200 IPR003954 GO:0003676
Car06g01752 659 SMART rrm2_1 40 113 IPR003954 GO:0003676
Car06g01752 659 SMART rrm2_1 322 394 IPR003954 GO:0003676
Car06g01752 659 SMART rrm2_1 219 291 IPR003954 GO:0003676
Car06g01752 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Car06g01752 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Car06g01752 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 391 IPR000504 GO:0003723
Car06g01752 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 288 IPR000504 GO:0003723
Car06g01752 659 Gene3D - 556 640 - -
Car06g01752 659 PANTHER RNA BINDING PROTEIN 28 643 - -
Car06g01752 659 CDD RRM3_I_PABPs 217 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01752 Car-Chr6 17344741 17351292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01752 38 658 Eukaryotic Initiation Factors Gene Family AT1G49760 73.376 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01752 K13126 - gmx:100813735 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01752 06 17344741 17351292 Car06g01752 06 17344741 17351292 ECH