Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01742 ATGGCCATGAGTGTAGATCATGATGAAGGTGTTCATTTGGGTTTGGTGTGGGAAAATGAGGCAGTGGATCTCACAAATTCTGATACCTCAGGTGAGAGTAGCAAACAGAAGTTAGAAATGAAAGCAATGAGAGAGAAAGAAGGAATTAAGAAGCGAAGTGATGGTGAAGGGAAAGATGGTAAGTATCGTGATTCTGATCATGAAATACATATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCTCTGGCCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGATAAGTCAACCATTGTGGATGCAGCAGTGAAGCACATAAAAAATCTACAACAAACTTTGGAAAAGCTAGAAAAGGAGAAAGAAAAAAGGCTCAAATCTGTGTCCTCATTTGGGAGTGAATCATCTATAATCAACTCTCATTGGCATCCCTATGAGTCAAGGGAAGCAATCATAGCTGATCAAGGATCCTCAAATTATAACTTTCCTTCAAATGCAATTGTAACTTCAAATCCTTCAAATGCATTTTCAACACCTCCACCACAAGTAGCCTTTCAAACATGGTCTTCTCAAAATGTTGTGTTGAACATTTGTGGAGGTGAAGCACAATTTTGCATTTGTGCAACTAAGAAGCCAGGACTAATGACCACAATTGCTTTTGTGTTGGAGAAACATAGGATTGATGTTATATCTGCCAACATTGTGTGCAATGGAAATGGAAACTTCTACATGATTCTAGCTCATGCGAAACAAGCTTCTCATCAGTTGCAAGATGCAAATTCAATGGAGGAAACATACAAGCAAGCGGCTGGAGAAATTATGATATTGATATCATAA 852 0.3873 MAMSVDHDEGVHLGLVWENEAVDLTNSDTSGESSKQKLEMKAMREKEGIKKRSDGEGKDGKYRDSDHEIHIWTERERRKKMRNMFSGLHALLPQLPSKADKSTIVDAAVKHIKNLQQTLEKLEKEKEKRLKSVSSFGSESSIINSHWHPYESREAIIADQGSSNYNFPSNAIVTSNPSNAFSTPPPQVAFQTWSSQNVVLNICGGEAQFCICATKKPGLMTTIAFVLEKHRIDVISANIVCNGNGNFYMILAHAKQASHQLQDANSMEETYKQAAGEIMILIS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01742 283 CDD bHLH_AtbHLH_like 70 117 IPR045239 -
Car06g01742 283 Coils Coil 105 132 - -
Car06g01742 283 SMART finulus 73 121 IPR011598 GO:0046983
Car06g01742 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 115 IPR011598 GO:0046983
Car06g01742 283 MobiDBLite consensus disorder prediction 34 63 - -
Car06g01742 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 136 IPR036638 GO:0046983
Car06g01742 283 PANTHER - 30 281 IPR044278 GO:0003700|GO:0006355|GO:0009960
Car06g01742 283 Gene3D - 57 132 IPR036638 GO:0046983
Car06g01742 283 PANTHER TRANSCRIPTION FACTOR BHLH95 30 281 - -
Car06g01742 283 MobiDBLite consensus disorder prediction 22 63 - -
Car06g01742 283 Pfam Helix-loop-helix DNA-binding domain 73 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01742 Car-Chr6 17251462 17253980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01742 14 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.076 7.35e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01742 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01742 - - mtr:MTR_4g085700 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01742 06 17251462 17253980 Car06g01742 06 17251462 17253980 ECH