Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01741 ATGCGTGGCAGTTTAGAACCGTTGGATTTAGGGATTCAGATTCCCTACCACTTCAGGTGCCCAATCTCGCTTGAGCTAATGCGAGATCCTGTCACGGTTTCCACTGGTCAAACCTACGACCGAGGCAGCATAGAGTCATGGGTGAGCACCGGAAACACCACGTGCCCTGTCACACGTGCCAATCTCACCGATTTCACTTTTATTCCAAATCATACCCTTCGCCGTTTAATCCAAGATTGGTGCGTCGCCAACCGCGCGTTTGGCGTCGAACGTATTCCAACTCCCAAACAGCCCGCGGACTCTTCACTTGTTCGATCTTTGCTTAACCAATCTTGTTCCCATTCTGCCCCTACTCAACTACGCCTTAACTCGCTCCGTCGACTCAGATCACTCGCTCGTGACTCGGAATATAACCGCTCTCTCATTGCTTCTCACAACGTTTGTCACATCCTATTACCTATTGTTTTCGACCATATCGCTTCCGACGAGTTGAAACATGAGTCACTCGCTTTGCTTGTACTCTTCCCACTCAGTGAGTCAGAATGCACTTCACTCGCCTCCGATTCAGATAAGATTAACTACCTCACACGTCTTCTCTCGCACTCTTCGTTTGATGTCCGAGTCAACTCGGCCGCCCTCATTGAGTTCGTTGTTGCCGGGACACATTCGCCGGAGATCCGTGCGCAGGTGAGCAATGTCGACGGGATCTACGACGGTGTCGTGGAGATACTAAAGAACCCGATCTCGTACCCGCGCGCGCTTAAGGTTGGGATCAAGGCCTTGTTCGCTCTCTGCCTAGTGAAGCAGACGCGCCACCGTGCGGTGGCTGCCGGTGCGCCTGTTGTACTTGTTGATCGGCTTGCCGATTTCGAGAAGTGCGACGCGGAGAGAGCGCTGGCGACGGTGGAGTTGCTTTGTCGGGTTCCGGCTGGAATTACGGCGTTCGCCGGCCACGCGCTCACAGTGCCGATGCTTGTGAAGATAATACTTAAGATTTCGGATAGAGCGACGGAGTACGCCGCCGGAGCGCTTTTGGCGCTGTGTTCGGAATCGGAACGATGTCAACGTGAGGCGGTTGCGGCGGGGGTGCTGACTCAGCTTTTGCTTCTGGTACAAAGCGATTGCACAGAAAGAGCGAAGAGGAAAGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGACTCCATCGGAAATTCTGACGATTTTGCATGCAGCCAAGTTGTTGTGGTGCCGTTTTGA 1248 0.5329 MRGSLEPLDLGIQIPYHFRCPISLELMRDPVTVSTGQTYDRGSIESWVSTGNTTCPVTRANLTDFTFIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADSSLVRSLLNQSCSHSAPTQLRLNSLRRLRSLARDSEYNRSLIASHNVCHILLPIVFDHIASDELKHESLALLVLFPLSESECTSLASDSDKINYLTRLLSHSSFDVRVNSAALIEFVVAGTHSPEIRAQVSNVDGIYDGVVEILKNPISYPRALKVGIKALFALCLVKQTRHRAVAAGAPVVLVDRLADFEKCDAERALATVELLCRVPAGITAFAGHALTVPMLVKIILKISDRATEYAAGALLALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQVVVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01741 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Car06g01741 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Car06g01741 415 Gene3D - 88 404 IPR011989 -
Car06g01741 415 SUPERFAMILY RING/U-box 12 90 - -
Car06g01741 415 PANTHER WDSAM1 PROTEIN 4 411 IPR045185 GO:0061630
Car06g01741 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 411 - -
Car06g01741 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Car06g01741 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Car06g01741 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Car06g01741 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01741 Car-Chr6 17230801 17232815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01741 1 415 U-box Gene Family AT1G49780 65.721 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01741 - - var:108341190 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01741 06 17230801 17232815 Car06g01741 06 17230801 17232815 ECH