Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01737 ATGGCTAACCCAAGTAGCAAATCTACACAAGCAATGTCGTCGGACTCCTTGGAACAGAAGGGGAAAAATATTACTGAATCGAATGCAAGTATGCTTCAATGTCCTTTAAGCCAGCCGCAACGTAACTCCTTAGATGGGCCAGTAGCTATCCTTTGGGATATAGAAAATTGTCCCGTTCCAAGTGATGTACGCCCAGAAGATGTAGCAGGTAATATAAGAATGGCTCTGCAGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCCAGGCGACTTAGAGAGGGATGCCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGACGCTGCTGACAAAGCAATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCGTCCTCTATCATGCTAATCTCTGGAGACGTTGATTTTGCTCCAGCTCTCCACATTCTTGGTCAGCGGGGATATACTATAATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTATTGTGGCTCGTGGAGAAGGTTTTGTCCCTCCTACAAAGGCTTTTGTGCCACCCCGTGGAGGTTCAGTTGAGCTTGCTGGATATTTGATGGGATGCCAAATTAATGACAGCACTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAAAGCTATTACAACTCAAGGGAATTATCAGTGGTATCACAATCTCTGTCTGAATATAACTCGTCACACATGTCTTGCTTGCCATCAACTATGAGATCGCACAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTATGCCTTCTAGTGACAATACTGAATGCGAGATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGCACAGCTGGTAAGGTTGCTTGAACTTTTTGGAGGATGTCTGCCCTTGGTCCGAGTTCCAGCAGATTATCAGAAAATTTATGGTAGGCCACTTTTTATATCTGATTATGGGGCATTCAAGTTGGTCAATCTTTTCAAAAAAATGGATGATGTCATTGCTGTGGACGGGAAAGGGTCTCGCAAATTTGTTTTTCTCAGAAACAGGAAGGCAGGCCCAAGTGCTCCTCCACTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAGGGGCAATGGAAGAGATCGCAAATGTTGTTGTTGGGGGTTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCATAGAAGAACAGGATGAAAGAAGTTTTACACGAAAGGGTAATCAGGGGAGAGCAGCCAGATGTGAAATTGATGACAGCATTCTTGAGCAGTTTAAGTGTGAGCTGCAGGAGATTCTAGTCAGCTATTCCTGTCGGATACTTCTAAGTTGTTTTGAGGCTGTATATCAGCAACGCTACAAGAAACAGTTGGAATATCAGAGGTTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCATGAGGAACCAGTAAGCAAGAGGAAATTCCTGGCTGCTGTGGGTAGTTAG 1593 0.4407 MANPSSKSTQAMSSDSLEQKGKNITESNASMLQCPLSQPQRNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPIVARGEGFVPPTKAFVPPRGGSVELAGYLMGCQINDSTDGQNEEEAIVYRGMSQSYYNSRELSVVSQSLSEYNSSHMSCLPSTMRSHSLPSGLNDVAGGPMPSSDNTECEIWVQPGDLNGLKAQLVRLLELFGGCLPLVRVPADYQKIYGRPLFISDYGAFKLVNLFKKMDDVIAVDGKGSRKFVFLRNRKAGPSAPPLSLAKKDKKGKGAMEEIANVVVGGCSSDELSDEERVVIEEQDERSFTRKGNQGRAARCEIDDSILEQFKCELQEILVSYSCRILLSCFEAVYQQRYKKQLEYQRFGVDKLEDLLEKVSDVVVLHEEPVSKRKFLAAVGS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01737 530 ProSiteProfiles OST-type HTH domain profile. 310 382 IPR025605 -
Car06g01737 530 CDD LOTUS 456 518 - -
Car06g01737 530 CDD PIN_limkain_b1_N_like 47 173 - -
Car06g01737 530 PANTHER LIMKAIN B LKAP 34 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Car06g01737 530 Gene3D - 41 192 - -
Car06g01737 530 Pfam NYN domain 47 187 IPR021139 GO:0004540
Car06g01737 530 Gene3D - 451 522 IPR041966 -
Car06g01737 530 Gene3D - 310 379 IPR041966 -
Car06g01737 530 CDD LOTUS 311 380 - -
Car06g01737 530 Pfam OST-HTH/LOTUS domain 455 518 IPR025605 -
Car06g01737 530 Pfam OST-HTH/LOTUS domain 312 376 IPR025605 -
Car06g01737 530 MobiDBLite consensus disorder prediction 1 23 - -
Car06g01737 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Car06g01737 530 PANTHER - 34 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01737 Car-Chr6 17176819 17180223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01737 36 198 C2H2 Transcription Factor Family AT5G61190 41.104 1.43e-29 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01737 06 17176819 17180223 Car06g01737 06 17176819 17180223 ECH