Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01706 ATGGCTCAACAAAGTAACAGTGGCGATCTGAATcagcatcctcagcagcaacagcagcagcatcagcagcaacagccatgggcgcagccgcatcagtatcaacaacaATGGATGTCTATGCAGTATCCTGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCTCAGCATTACATGCCGTATGTTCATCCTCATCATTATCAGCCGCCACATCAGCAACAGCCTTCGCCGCCTCCTCAGAGTCATCATAACCACCATCATCACCAGCAGCAGCAGAAACAAGTCTCTCCCGATGAGATCAAGACGATCTGGCTTGGTGACCTTCACCATTGGATGGACGAAACTTTTCTTCATAACTGCTTTGCTCACACCGGCGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTATTGAGTTCTATTCGCGGGCGACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACTATGATGCCAAATACAGATCAGGCTTTTCGTCTGAATTGGGCTTCATTCAGCGCTGGTGGCGGTGAGAGACGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGGTGTTTGCTAGCAGATACTCATCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATTCTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGGCGATGCGAATAGGTGTTGCAACACCCAAAAAAACTTATGGAAATCCCCAACAATATGCCTCACAAGCTGTGGTGTTGGCTGGTGGACACTCATCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTGTCTCTGTGAAGATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGACGCAATTCAAGCATTGAACGGAACAATGATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAATGATTCTAATGGGAATCATTACGGTGGCGGTCAGGGTTATGGAGGCCATGGATATGGAGGTCATGGATTTGCTGCTAGACAGAATCAGGATATAGCTATGCAACCTGCTGCTGCAATTCAAGGTGCTTCCTAA 1329 0.4296 MAQQSNSGDLNQHPQQQQQQHQQQQPWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQPPHQQQPSPPPQSHHNHHHHQQQQKQVSPDEIKTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFIEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWASFSAGGGERRSSDATSDLSIFVGDLAIDVTDAMLQEVFASRYSSIKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRAMRIGVATPKKTYGNPQQYASQAVVLAGGHSSNGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNKHWRNDSNGNHYGGGQGYGGHGYGGHGFAARQNQDIAMQPAAAIQGAS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01706 442 Gene3D - 299 426 IPR012677 -
Car06g01706 442 MobiDBLite consensus disorder prediction 1 30 - -
Car06g01706 442 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 23 441 - -
Car06g01706 442 CDD RRM2_SECp43_like 199 278 - -
Car06g01706 442 CDD RRM3_NGR1_NAM8_like 318 389 - -
Car06g01706 442 CDD RRM1_SECp43_like 105 185 - -
Car06g01706 442 Gene3D - 199 276 IPR012677 -
Car06g01706 442 SMART rrm1_1 105 180 IPR000504 GO:0003723
Car06g01706 442 SMART rrm1_1 320 387 IPR000504 GO:0003723
Car06g01706 442 SMART rrm1_1 201 275 IPR000504 GO:0003723
Car06g01706 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Car06g01706 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Car06g01706 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Car06g01706 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 391 IPR000504 GO:0003723
Car06g01706 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Car06g01706 442 SUPERFAMILY RNA-binding domain, RBD 198 297 IPR035979 GO:0003676
Car06g01706 442 SUPERFAMILY RNA-binding domain, RBD 66 184 IPR035979 GO:0003676
Car06g01706 442 MobiDBLite consensus disorder prediction 389 408 - -
Car06g01706 442 SUPERFAMILY RNA-binding domain, RBD 310 420 IPR035979 GO:0003676
Car06g01706 442 MobiDBLite consensus disorder prediction 66 100 - -
Car06g01706 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 279 IPR000504 GO:0003723
Car06g01706 442 Gene3D - 65 197 IPR012677 -
Car06g01706 442 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 441 - -
Car06g01706 442 MobiDBLite consensus disorder prediction 389 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01706 Car-Chr6 16824856 16829377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01706 201 405 Eukaryotic Initiation Factors Gene Family AT4G34110 27.619 3.27e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01706 - - mtr:MTR_4g086600 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01706 06 16824856 16829377 Car06g01706 06 16824856 16829377 ECH