Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01661 ATGGTTTATACCTTTTGTGACACAATTTCTTCATCTGGGTATGATAGTTTGGATTTGTTTAATCCAACTTTGCATGACTTTGGAGCTTCTAATGGCGTTTCGAGAAATGGGTTGCCAACATCTGATTCATTGATTTTAGAAAGTGAGAAGGAAAAGGTGGTGAAGTGCCCTGTGACTGCAAAGGTAGGTAAAGATGAGATTTCTCAGGCTAAAGTTTTGGCTGCTATGAAGAATCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAATGGTCATCTTGCCACACTACGTGGTCTTGTGGCTTCCACTAATCAAAAGATGGACAAAGCCACGTTACTTGGTGAAGTGATTAGCCAAGTTAAGCAATTGAAGAAGAATGCAACGGAAGCAAGCAAAGGTTATCTCATTCCAATGGAAACTGATGAAGTGAAAGTTGAACCATATAATGTTGAAGAAAGAAATGGATGCATGTCTTACATAGCAACTATATGTTGTGATTTCCAACCTGAGATACTATCTGACCTCAGAAAAACACTTGATGCACTTCAACTTCAACTAGTGAAAGCAGAAATGTCAACATTGGAAAACAGAATGAAGAATGTATTTATTTTTACATGTTGCAAAGGGGATAGTATTAATAATGTTAAGGCATGTCAAAGTATTGCAAATGTTGTTCATAAGGCACTAGGTTCTGTGCTGGAAAAGGCTTCTAATTCATTGGAATTCTCACTCGGAAGTTCATATCCAAACAAGAGGAGAAGAATGTGCTTTGTTGAAGCATCTACTTCATGCAATCATGGATCTTGTTTTGTAGATTTGGGTTATTTGCAGTGTAATGCAATCAAAACAAGGAATACAAGCCTTGGATGCTTAATATTTGACTGTGTGAAAAAGCTTCACTTTGGGAGCTGGGAAGAGAAAGAGGAAGCAGCAAAGGAAATTGAAATGTTGGTTAAAGATGTCAAGGTCACAAAGTTGATGACTGAACTTGGTGTCGGTGGCTGTGTCCAAGGTGACCCAATGCCAAACATGCAAGCGAGTTGTAGGTGCGGCGGTAGTTACGACGTGGAGCAGGCCGCACGAGGGAGAGGCAGTGATTTGAGGTTTCATCGAGCAGGAGTCGAACAAGAGCATCAAGAGGGAGACCATGTAGTCAATGGAGCAGGAAAGGAAAGTTGTAACCTAAGAATCTCATTGGAAACTAACCAAGCAAAGTGGTTGTAA 1227 0.4018 MVYTFCDTISSSGYDSLDLFNPTLHDFGASNGVSRNGLPTSDSLILESEKEKVVKCPVTAKVGKDEISQAKVLAAMKNHSEAEKRRRERINGHLATLRGLVASTNQKMDKATLLGEVISQVKQLKKNATEASKGYLIPMETDEVKVEPYNVEERNGCMSYIATICCDFQPEILSDLRKTLDALQLQLVKAEMSTLENRMKNVFIFTCCKGDSINNVKACQSIANVVHKALGSVLEKASNSLEFSLGSSYPNKRRRMCFVEASTSCNHGSCFVDLGYLQCNAIKTRNTSLGCLIFDCVKKLHFGSWEEKEEAAKEIEMLVKDVKVTKLMTELGVGGCVQGDPMPNMQASCRCGGSYDVEQAARGRGSDLRFHRAGVEQEHQEGDHVVNGAGKESCNLRISLETNQAKWL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01661 408 PANTHER TRANSCRIPTION FACTOR BHLH30 8 264 IPR045847 GO:0003700|GO:0006355
Car06g01661 408 CDD ACT_UUR-ACR-like 163 206 - -
Car06g01661 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 124 IPR011598 GO:0046983
Car06g01661 408 Gene3D - 70 134 IPR036638 GO:0046983
Car06g01661 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 131 IPR036638 GO:0046983
Car06g01661 408 CDD bHLH_AtAIG1_like 69 148 - -
Car06g01661 408 PANTHER DNA BINDING PROTEIN-LIKE 8 264 - -
Car06g01661 408 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Car06g01661 408 Coils Coil 173 193 - -
Car06g01661 408 SMART finulus 80 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01661 Car-Chr6 16384640 16390953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01661 61 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.500 2.69e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01661 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01661 - - gmx:100804756 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01661 06 16384640 16390953 Car06g01661 06 16384640 16390953 ECH
Car01g00404 01 3164403 3167353 Car06g01661 06 16384640 16390953 ECH