Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01660 ATGGACTTCTCCAAAAAGCGCAAAACAGAAGAGAACGGCGACGCTAATTCTCCGCCCCCCTCAACAGACGCCGCCGCAACCACCACCGCCACTCTCACCCCAGAAGACATCCGCAAGATGATCCAACCGTTCACACAGGACCAGTTACTAGACCTTCTCCAATCTGCCTCCCTCCAACACCCCAACGTTCTCGACTCCGTACGCTCCATAGCCGACCGCGACAACACCCGCCGTAAACTCTTCGTCCGCGGCCTCGCAGGCGATACCACCACCGACACTCTCCGCGCCGTATTTTCATCATACGGCGACCTAGAAGAAGCCATCGTGATATTCGACAAGTCCACTGGCAGGTCCAAAGGTTACGGCTTCGTCGTGTTCCGACACGTCGACGGTGCAATTCTCGCCCTAAAAGAACCAAGCAAGAAAATCGACGGTAGGATGACGGTTACACAGCTTGCGGCGGCGGGTGCTGGATCGACCGGCGGTGATGTCTCTGCTCGTAAAGTTTTCGTAGGAAACGTTCCGTTTGAAGTGTCATCGGAGAGTCTATTGAGTGAGTTTTCCAAGTATGGTGAAATCGAAGAGGGTCCTCTAGGGTTTGATAAATCGAGTGGAAAAACGAGAGGTTTCGCTTTCTTCGTTTATAAAACCGAAGAAGGTGCGAGAGCTTCGCTTGTGGAGTCTCTTAAAACCGTTGATGGTCACCAAGTGATTTGCAAGTTGGCTGTCGATAATAAAAAGCCCAAGCCCGGTAACCAAAACCCATCGGGATTTCCAGTGGATAATTCTTCTTCTAATTTACATGCTCCTAATGCTATGATGATGCCGCAATATGGTGCTCCTCATAATACTTACGGGCAACAGCCGTATAGTAATCAGGCTCCCTCTGCTGGTGGCTATGGGCCTCCAATTGGAGGAGGTGCTTCTCAGTATGGTGGGCCTGGGCATATGCCTGGGCCTGTTTCAGGTCCAAGAGCGCCTCCGGCTTCTGTTGGAGGATACCCTGATGGTTCGCAGTACGGTTACCCATCACAACCTATGCCGATGGCGAGACCTCCTCCTGGAGGAATGTACCAAGGCGTGCCACCTTATTATTGA 1098 0.5219 MDFSKKRKTEENGDANSPPPSTDAAATTTATLTPEDIRKMIQPFTQDQLLDLLQSASLQHPNVLDSVRSIADRDNTRRKLFVRGLAGDTTTDTLRAVFSSYGDLEEAIVIFDKSTGRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGAGSTGGDVSARKVFVGNVPFEVSSESLLSEFSKYGEIEEGPLGFDKSSGKTRGFAFFVYKTEEGARASLVESLKTVDGHQVICKLAVDNKKPKPGNQNPSGFPVDNSSSNLHAPNAMMMPQYGAPHNTYGQQPYSNQAPSAGGYGPPIGGGASQYGGPGHMPGPVSGPRAPPASVGGYPDGSQYGYPSQPMPMARPPPGGMYQGVPPYY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01660 365 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 339 - -
Car06g01660 365 SUPERFAMILY RNA-binding domain, RBD 66 153 IPR035979 GO:0003676
Car06g01660 365 MobiDBLite consensus disorder prediction 346 365 - -
Car06g01660 365 MobiDBLite consensus disorder prediction 288 365 - -
Car06g01660 365 PANTHER GEO13361P1-RELATED 1 339 - -
Car06g01660 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Car06g01660 365 CDD RRM_RBM24_RBM38_like 78 152 - -
Car06g01660 365 MobiDBLite consensus disorder prediction 249 269 - -
Car06g01660 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 226 IPR000504 GO:0003723
Car06g01660 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 146 IPR000504 GO:0003723
Car06g01660 365 Gene3D - 29 161 IPR012677 -
Car06g01660 365 Gene3D - 162 266 IPR012677 -
Car06g01660 365 SUPERFAMILY RNA-binding domain, RBD 164 262 IPR035979 GO:0003676
Car06g01660 365 MobiDBLite consensus disorder prediction 1 26 - -
Car06g01660 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 248 IPR000504 GO:0003723
Car06g01660 365 MobiDBLite consensus disorder prediction 245 269 - -
Car06g01660 365 SMART rrm1_1 79 151 IPR000504 GO:0003723
Car06g01660 365 SMART rrm1_1 168 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01660 Car-Chr6 16380399 16383823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01660 150 341 C2H2 Transcription Factor Family AT2G19380 27.692 5.04e-15 74.7