Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01641 ATGGCTTCCTCCAACAAACATTGGCCTAGCATGTTCAAGAAGTCGTCCAAGACGTCCAACCATCTCAATTGGCAGCATGGTATCAACTCATCTCTCCTCTCCACTGCTTTCCAAAGAACTCCTACTTCAGGAGCAGGTGACGAGAGAAGTccagaaccaaaaccaagatggaatccaaaaccagaacaaaTTCGCATACTTGAAGCAATCTTCAACTCAGGCATGGTGAACCCTCCAAGAGAAGAGATAAGAAAAATAAGGGCACAACTACAAGAGTATGGCCAAGTTGGTGATGCCAATGTCTTTTACTGGTTCCAGAACCGTAAGTCAAGGAGCAAACACAAACTTCGACACCTCCACAATTCTAAAACCAATAAAAACAAGAATCCAGAATCTTCAAATTCTTCAAATTCTCTCCCTCAAATCACTGCACCACCTTCGTCTTCGTCTTCTGATAAGAAAGCCAACAATGAATTCTCCAATATTGGTTTTTCAAATGGTGTTGTGGTGTCTAATTCCCCTACAACTACAACCTCTGTGGATCAAAACCAAGCTAGTGGTTTTTTTCAGACACCATTTTATAATTTCCCTGTGGAGAATAATAATAATGATGGTATGACAACACAAGGGTTTTACTTACCTGAGTTTTCTAATATCATTCACCACCAGGATTTACCTCAACAGAATGTTGTGCCTTTGGTTAATGATCAGATCATGATCATGAACTTTGCAAATGAAAATCGAAATGGAACTTCTTCTTCGATGAAAGACCAGCAGGGTCAAGATATTCAAGACCCACAACTCAGTTTTTGTGACACTTCAGCTTCAAGTACTGAAGATCCAACTCTTGTTCCTCACATTCCCATTACTAATGCTGCAGATGTTACTGTTCCACCCTCCATTACAGATCAACTTCAAGGTGTTGGTGAGGAGGCAGATGGTAGAGCAAAATGCACAGTCATCATAAACGACGTCGTATTCGAGGTTGATGTGGGGCCCTTTAACGTTCGTGAAGCCTTTGGTGATGGAGCTGTTCTCTTTGACTCCACCGGCCACCCTATTCTCACCGACGACTGGGGTGTCACCCTCCACTCACTCCACCATGGCGCATCTTATTATCTGATTTAA 1128 0.4096 MASSNKHWPSMFKKSSKTSNHLNWQHGINSSLLSTAFQRTPTSGAGDERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLHNSKTNKNKNPESSNSSNSLPQITAPPSSSSSDKKANNEFSNIGFSNGVVVSNSPTTTTSVDQNQASGFFQTPFYNFPVENNNNDGMTTQGFYLPEFSNIIHHQDLPQQNVVPLVNDQIMIMNFANENRNGTSSSMKDQQGQDIQDPQLSFCDTSASSTEDPTLVPHIPITNAADVTVPPSITDQLQGVGEEADGRAKCTVIINDVVFEVDVGPFNVREAFGDGAVLFDSTGHPILTDDWGVTLHSLHHGASYYLI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01641 375 CDD homeodomain 53 115 IPR001356 GO:0003677
Car06g01641 375 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Car06g01641 375 SUPERFAMILY Homeodomain-like 50 117 IPR009057 -
Car06g01641 375 MobiDBLite consensus disorder prediction 126 158 - -
Car06g01641 375 MobiDBLite consensus disorder prediction 113 158 - -
Car06g01641 375 MobiDBLite consensus disorder prediction 1 21 - -
Car06g01641 375 Gene3D - 54 119 - -
Car06g01641 375 MobiDBLite consensus disorder prediction 38 62 - -
Car06g01641 375 SMART HOX_1 52 119 IPR001356 GO:0003677
Car06g01641 375 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Car06g01641 375 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 375 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01641 Car-Chr6 16208628 16211624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01641 1 375 Wox Gene Family AT2G33880 42.821 2.14e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Car06g01641 Homeodomain 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01641 - - cam:101499910 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01641 06 16208628 16211624 Car06g01641 06 16208628 16211624 ECH