Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01626 ATGACAGGTTTGATTGATCTAAACACTACTGAGGACGATGAAACGCCGTCGTCTGGTTCATCCTCAAACACCAGCATAGGTAGTACTTTTCTTGGTTCTGGTTCTGGTTCTTCTGTGTGTTTGGAGCTATGGCATGCTTGTGCGGGTCCTATGATCTCTTTGCCGAAGAAAGGAAGTGTTGTTGTGTATTTTCCTCAGGGACACTTGGAACATCTTCACGATTTTCCGTTATCTTTCTCTGATAATATACCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCTGAGGAAGGGAGTGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAATGCAGCAGAAGTTAAGGGAGGGTGAAGATGATGCTGATGGTGAAGGCGAGGATGCCGAAGCTGTTATGAAGTCAACAACACCACACATGTTCTGCAAGACTCTCACTGCTTCTGATACTAGCACTCATGGAGGATTCTCCGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACACTCAAACAAGACCTTCACAAGAGCTTGTGGCAAAGGATTTGCACGGTCAGGAATGGAGGTTTCGTCATATTTACAGAGggcagccacgaaggcacttgcttacaactggatggagtgcatttgtgaacaaaaagaagcttgtatctggagatgctgttctgttcctaagGGGTGAGGATGGAGAATTGAGATTGGGAATCCGTAGGGCAGCGCAATTGAAAAGCTGCAGCAATTTTTCATCTCTCTCGGGCCAACAATTTAATCTCGGCAGTCTTACAGATGTAGTTAATGCTTTATCTACTAGATGTGCATTTAGCATTCACTATAATCCAAGGGTTGGTTCATCCGAGTTCATCGTACCTATCCAAAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAACGAAGATTCGCAGGATTAATAATTGGAATTACTGATGTGGATCCCGCTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACATGGAAGTTTCAAGGCATAATAGGGTTTCGCCATGGGAGATTGAGCCCTCTGGCTCAGCTTCCACCACCAATAGCTTGATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTGCCTTCATCAAAGCTAGAATTTCCAGTTCCCAATGGAATTGGTGCATCAGACTTTGGGGAATCACTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGCGTTGATACTACTTTCGATAGTATTAGTGCTCAGCGTCACCACTTATCTGAATTACGAAGGTGCTATCCCGGTTCAAACTGTCACGGGATAGCTACAACAGGAAATAGCATCAGAATGCAACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCCGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGTCAACCATATGGAAGAGCCTTTTCTGTCGATGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCATATGCTGAGATCCACAAATGAATGGTCTTACTCTTCCCAGATGAATAACAAAGCACATTTGCATCCATCTGGACAAGTTTCATCTCCTCCATCGGTGTTAATGTACCAACACACAGTCAATCCAGTTTCAAACTTCAGTTACAATAACAATATTGATCAGGTGATGGAGGATAGAGTTCATCAAAGAGGTTCATTTTATACTTCTGAGGTGAAAGGTGGTACATTTGCATCAACTCCATCTTACGAGCCTAGTTTCCGTGGGCCTCAGAACAACACAAATTCATTTAGTACACAACATTCACACGATTCAATTTCACTACAGAGGGGCAGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTAACCGAGGGTGCTCCCCTTGCAAGTAAAGAGACCGAACCATCTGCAGTCACTTGTCAGATAAATCCCGGACCCTCCTCCTTCACAAGACATGTTGAAGATGATTTCAATCCGAGGCATTTGCTTAGGAGCAATGCGGTTGAAAGTTACTGTACTAAAGTAAGCAATCTTCATCCTGTTAGAGACATGGTAATCGATAGAGTATTATTCTAG 2178 0.4155 MTGLIDLNTTEDDETPSSGSSSNTSIGSTFLGSGSGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLSFSDNIPSHVFCRVVDVKLHAEEGSDEVYCQVLLVPESEQMQQKLREGEDDADGEGEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQTRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSCSNFSSLSGQQFNLGSLTDVVNALSTRCAFSIHYNPRVGSSEFIVPIQKFLKSLDYSYSVGMRFRMRFESEDAAERRFAGLIIGITDVDPARWPGSKWKCLVVRWDDMEVSRHNRVSPWEIEPSGSASTTNSLMAASLKRTKIGLPSSKLEFPVPNGIGASDFGESLRFQKVLQGQEILGVDTTFDSISAQRHHLSELRRCYPGSNCHGIATTGNSIRMQQMNSDVSCNGFGESFRFPKVLQGQEILPSQPYGRAFSVDEACRNGRFGLFDGHHMLRSTNEWSYSSQMNNKAHLHPSGQVSSPPSVLMYQHTVNPVSNFSYNNNIDQVMEDRVHQRGSFYTSEVKGGTFASTPSYEPSFRGPQNNTNSFSTQHSHDSISLQRGSQELVSTCKSSCRVFGFSLTEGAPLASKETEPSAVTCQINPGPSSFTRHVEDDFNPRHLLRSNAVESYCTKVSNLHPVRDMVIDRVLF 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01626 725 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Car06g01626 725 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Car06g01626 725 MobiDBLite consensus disorder prediction 1 26 - -
Car06g01626 725 Pfam Auxin response factor 275 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g01626 725 SMART B3_2 148 250 IPR003340 GO:0003677
Car06g01626 725 Gene3D - 146 250 IPR015300 -
Car06g01626 725 PANTHER AUXIN RESPONSE FACTOR 30 709 - -
Car06g01626 725 CDD B3_DNA 146 248 IPR003340 GO:0003677
Car06g01626 725 Gene3D - 311 385 - -
Car06g01626 725 SUPERFAMILY DNA-binding pseudobarrel domain 141 257 IPR015300 -
Car06g01626 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 709 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01626 Car-Chr6 16069034 16074901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01626 29 725 B3 DNA Binding Superfamily AT5G60450 40.165 3.85e-146 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g01626 B3 1.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01626 K14486 - gmx:100808119 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01626 06 16069034 16074901 Car06g01626 06 16069034 16074901 ECH