Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01601 ATGCCGGCACAGAAGCGTTCTCACGACGAGGCTCTCCAAGAGATTGAGATAAACAGCGAGGAGCAACCTAAAGATGAAGTCGAATCGGATCAAAACCGTTCATCTGACAGCgaagaagaagaagaagaagaATATGTGGCTATAAAATTGTCAGATGTACGCAAAGAAGTTCAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACCGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGTCCTACTTGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGATCCGAACTATGATGCCTTGATTGCTGCTATCTATCCAGATATTGACAAGTATGAGGAAGAGGAATTGGCTATGCATGAGGATGAGATGACTCGCCATAAGCAGATCCAAGCATCCATTGCCCAAACGCATCAACGGCAATCAGAAGCATTGAGTAAGAAACGAAATGCCAAAGCAACAGCAGTGGCTTTTATGAGATCACAAGGCAACTATCGAGCTTCACATCCAAGACGCCGAAGAAACTTTAGAAATGCAGGTGACTTTCAGGTATCCAATGACAATGAAGGTATGCATGATAATGATGGAGGAAAGGACTTATGTTCCGACGATGGGCAGACAGAAACCCAGCCAAGAAGATGCAAAAGAGGCGGAGAACAAGAAACACAATTTCCTCAGCATTCTGCCTCTACTGATCCAGATGGAGTTGGTGATGAAATTACTCCAGAAGTAAATAGAGAAATCATAAGTGCATCTGGTACACTTTCGTGGGGAAAAAATGGTCACCGAAGTCACAGCCGAGTTAATGGAAAGAATGCCAAAAACAATCGCATCTCCAGATTGGTTGAACATATTCGTAACTCGGCAGCAAATGATTATGAGCTGTCTGTCTTTCTCAAGCTTGTCTCATTGGATGAGCAAAGAATACGAAGTTTGGACGAGCCATGCCTTACTTGCAAGCCTACTACGTCAGTCAAGATACTGTGCAAGCATGTTGCAAATGAAACTGCACTGCCTGCGGATGAAGTTGAATTATGGTTGGTATTAAAGCCACAAGTTAGCATTGTAGGAGGTGAAAGAACCATTGATCCAGACAAAGATATTTTTCGTGTTCTAGGAGACCAAGAAACATTGGCTGAATTGCTGGCCACTTATGAAAATACCAGCCGTGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACACGGTTGGGTTAAGCTAA 1281 0.4325 MPAQKRSHDEALQEIEINSEEQPKDEVESDQNRSSDSEEEEEEEYVAIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRTHCASRRSLRDDPNYDALIAAIYPDIDKYEEEELAMHEDEMTRHKQIQASIAQTHQRQSEALSKKRNAKATAVAFMRSQGNYRASHPRRRRNFRNAGDFQVSNDNEGMHDNDGGKDLCSDDGQTETQPRRCKRGGEQETQFPQHSASTDPDGVGDEITPEVNREIISASGTLSWGKNGHRSHSRVNGKNAKNNRISRLVEHIRNSAANDYELSVFLKLVSLDEQRIRSLDEPCLTCKPTTSVKILCKHVANETALPADEVELWLVLKPQVSIVGGERTIDPDKDIFRVLGDQETLAELLATYENTSRGYLVMAYKRKLQNSDTVGLS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01601 426 MobiDBLite consensus disorder prediction 174 255 - -
Car06g01601 426 SUPERFAMILY RING/U-box 47 113 - -
Car06g01601 426 MobiDBLite consensus disorder prediction 1 43 - -
Car06g01601 426 PANTHER OS11G0578200 PROTEIN 1 418 - -
Car06g01601 426 CDD RING-HC_RING1_like 59 99 - -
Car06g01601 426 MobiDBLite consensus disorder prediction 207 236 - -
Car06g01601 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 129 IPR013083 -
Car06g01601 426 SMART ring_2 59 98 IPR001841 -
Car06g01601 426 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Car06g01601 426 MobiDBLite consensus disorder prediction 1 31 - -
Car06g01601 426 Pfam Zinc finger, C3HC4 type (RING finger) 58 98 - -
Car06g01601 426 ProSiteProfiles Zinc finger RING-type profile. 59 99 IPR001841 -
Car06g01601 426 PANTHER OS11G0578200 PROTEIN 1 418 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01601 Car-Chr6 15820533 15826333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01601 52 122 C3H Transcription Factor Family AT3G23060 35.135 8.21e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01601 K10695 - zju:107425269 444.121