Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01600 ATGTCGTCAAGACAGAAACGTTCTCGCGAGGAGCCTCTTGAAGCCACTGAGACTGATATTTCTGAAGTTATAGACGCTGACACTgatgaagatgaagaagaagaagtagaagaagaagaATATGTGACTATCGATATGTCACTTGTACGCAAGGAGGTTGAGTGTCCTATTTGTCTTGGCATCATTCGGAAAACAAGTACAGTAATGGAATGCTTACACCGCTTTTGCAGAAAGTGCATAGACAAATCTATGCGCCTTGGCAACAAAGAATGTCCTAGTTGCCGTACACATTTGGCTAGTCGACGCTCACTAAAAGATGACCCAAACTATGATATCTTGATTGCTACTCTCTTTCCAAACATTGACAAGTTTGAGGAAGAGGAATTTGCTTCGCTTGAAGAAGAGTTGGGTCTTCCTAAGAAGGGGATTTGA 432 0.3912 MSSRQKRSREEPLEATETDISEVIDADTDEDEEEEVEEEEYVTIDMSLVRKEVECPICLGIIRKTSTVMECLHRFCRKCIDKSMRLGNKECPSCRTHLASRRSLKDDPNYDILIATLFPNIDKFEEEEFASLEEELGLPKKGI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01600 143 ProSiteProfiles Zinc finger RING-type profile. 55 95 IPR001841 -
Car06g01600 143 MobiDBLite consensus disorder prediction 17 41 - -
Car06g01600 143 MobiDBLite consensus disorder prediction 1 41 - -
Car06g01600 143 Pfam Zinc finger, C3HC4 type (RING finger) 54 94 - -
Car06g01600 143 SUPERFAMILY RING/U-box 54 108 - -
Car06g01600 143 SMART ring_2 55 94 IPR001841 -
Car06g01600 143 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Car06g01600 143 MobiDBLite consensus disorder prediction 1 16 - -
Car06g01600 143 CDD RING-HC_RING1_like 55 95 - -
Car06g01600 143 PANTHER OS11G0578200 PROTEIN 11 136 IPR044592 -
Car06g01600 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 124 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01600 Car-Chr6 15805847 15809429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01600 55 141 C3H Transcription Factor Family AT2G30580 35.556 5.27e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01600 K10695 - sly:101258122 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01600 06 15805847 15809429 Car06g01600 06 15805847 15809429 ECH