Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01598 ATGGAGAGGTCAGAGGAAAAATGGAGTTTGGTGGATGAGGAAGAAGAGGAAAGTGGAGAGGAGGGGATAAAGAAAAGGGTAGTGAAAGGGAGCAAAGGTGCTGGAGGTTCATCAAATATAGCAACTTGTTGTCAAGTGGAAAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTATCATAGGAGACATAAGGTTTGTGAGTATCATGCCAAAGCACCTGCCGTACACATTTCTGGGCTGCAACAAAGGTTTTGCCAGCAATGTAGCAGATTTCATGAGCTATCCGAATTTGATGACTCAAAAAGAAGTTGTAGGAGGCGTTTGGCCGAGCATAATTTGAGGCGTCGCAAAAATGCAAATGACTGA 366 0.4372 MERSEEKWSLVDEEEEESGEEGIKKRVVKGSKGAGGSSNIATCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHISGLQQRFCQQCSRFHELSEFDDSKRSCRRRLAEHNLRRRKNAND 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01598 121 Pfam SBP domain 44 117 IPR004333 GO:0003677
Car06g01598 121 Gene3D - 35 105 IPR036893 GO:0003677|GO:0005634
Car06g01598 121 SUPERFAMILY SBT domain 42 119 IPR036893 GO:0003677|GO:0005634
Car06g01598 121 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 119 IPR044817 GO:0003677
Car06g01598 121 ProSiteProfiles Zinc finger SBP-type profile. 41 118 IPR004333 GO:0003677
Car06g01598 121 MobiDBLite consensus disorder prediction 1 38 - -
Car06g01598 121 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 4 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01598 Car-Chr6 15786854 15788817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01598 32 121 SBP-box Gene Family AT2G33810 68.889 1.85e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car06g01598 SBP 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01598 - - gmx:100527199 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01598 06 15786854 15788817 Car06g01598 06 15786854 15788817 ECH
Car06g01598 06 15786854 15788817 Car01g02027 01 45538889 45541388 ECH
Car01g00334 01 2602840 2605215 Car06g01598 06 15786854 15788817 ECH
Car01g02027 01 45538889 45541388 Car06g01598 06 15786854 15788817 ECH
Car06g01598 06 15786854 15788817 Car01g00334 01 2602840 2605215 ECH