Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01594 ATGAGTCATTCCCAGATGAATGCTCACATCTCAGATAATACTGCCTTTCCTACACCTTATTCATCATATAATTATAATCCCTCAATGAATCACCCTCAATATCAAGGCTATCCTTATCTAATTCCAAATACTCCTGAAGTTCAAGCTCAAAGAGAAGAGGATAGGAAGAAGATGGAAGCATATAGGTGCAAAATTGCAAGGGAACAAAGAAAACAATTGTTACAAAAACGTAGAAGTACTCCTTCTAAGGCCTCAGAAGGGACAAGACAACCTATTTATATTCAAGTGAGAGAGCCAATTGTTCCCAATGTTTTTTTCACTCCAGATGGAAAGCGTCTTGAAGAAATTCTAACAAAGAAGTTGAAAAATAGTGACGTAACCAGCTTGGGACGCATTATACTTCCAAAGAGAGAGGCTGAGGAAAAGCTTCCAGCCCTAAGCAGAGAAGGGATGGAACTTGTTCTCAATGATGTATATTCTGAACTAGAATGGAAAGTCAAATTCAAGTTTTGGATTAATGGAAAAACTAGAATGTATGTTCTTGAGAATACAGGGAATTTAGTGAAGCATTACAAACTACATGCTGGAGATTTTGTAACCCTTTATGAGGATGAATTTAAAAACATGTATATGTCCATTCACAAGGACCCCAAGCATGAAGAACTTGAGCTAATTCCTTGTGCAGAACATGCCAAGGATAAAGAACCGAATCCATTATCTTGTCGAGAGACCGATAAAACTACATCGATTAGGGCCCAAACCATTTTGGAAAatgatgttggtaatggcgatggtgatgatgacgatgatCAACAACAAACTAGGTTGAATGAAGTCTACGAGAGCCTTCAAAACATTTTCGATGTTTGTTATCCAGAATGA 882 0.3583 MSHSQMNAHISDNTAFPTPYSSYNYNPSMNHPQYQGYPYLIPNTPEVQAQREEDRKKMEAYRCKIAREQRKQLLQKRRSTPSKASEGTRQPIYIQVREPIVPNVFFTPDGKRLEEILTKKLKNSDVTSLGRIILPKREAEEKLPALSREGMELVLNDVYSELEWKVKFKFWINGKTRMYVLENTGNLVKHYKLHAGDFVTLYEDEFKNMYMSIHKDPKHEELELIPCAEHAKDKEPNPLSCRETDKTTSIRAQTILENDVGNGDGDDDDDQQQTRLNEVYESLQNIFDVCYPE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01594 293 Pfam B3 DNA binding domain 118 208 IPR003340 GO:0003677
Car06g01594 293 Gene3D - 106 223 IPR015300 -
Car06g01594 293 ProSiteProfiles B3 DNA-binding domain profile. 117 217 IPR003340 GO:0003677
Car06g01594 293 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 4 237 - -
Car06g01594 293 Coils Coil 51 71 - -
Car06g01594 293 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 237 IPR044800 GO:0003700
Car06g01594 293 CDD B3_DNA 116 211 IPR003340 GO:0003677
Car06g01594 293 SUPERFAMILY DNA-binding pseudobarrel domain 116 214 IPR015300 -
Car06g01594 293 SMART B3_2 117 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01594 Car-Chr6 15717043 15718480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01594 107 216 B3 DNA Binding Superfamily AT1G28300 54.054 1.04e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car06g01594 B3 6.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01594 - - cam:101497974 573.163