Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01590 ATGGACTCGAAGGCAAAGAAGATGAGTGGGTTCGGTTCGGGATTGAAGAAGGAAAAGATAAGAGATGGGTTTGAAGAAAGGGTGGTTCAAGTTAGGAGGGTTACTAAGGTTGTGAAAGGAGGGAAACAAATGAGGTTTAGGGCTATAGTTGTTGTTGGTGATAAGAAAGGACAAGTTGGTGTTGGTGTTGGGAAGGCTAAGGAAGTTATTGCTGCTGTTCAGAAAGCTGCTATTAATGCTAGGAGGAATCTTGTTAGAGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGATCTGACGGAGATGTTGGAGCGGCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGTGTTATTGCAGGTGGGTCTGTGCGAATTGTTCTTGAAATGGCAGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGGGCAACTGTTGTTGCAGTGCAGAGAATGAGGCAGTACAGTGAGGTCTCTGCGGAGCGTGGGATCCCTATGGAAGAGTTATGGAAGTAA 543 0.4586 MDSKAKKMSGFGSGLKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKKGQVGVGVGKAKEVIAAVQKAAINARRNLVRVPMTKYLTFPHRSDGDVGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVVAVQRMRQYSEVSAERGIPMEELWK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01590 180 ProSiteProfiles S5 double stranded RNA-binding domain profile. 24 87 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car06g01590 180 SUPERFAMILY dsRNA-binding domain-like 20 89 - -
Car06g01590 180 Pfam Ribosomal protein S5, N-terminal domain 24 88 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car06g01590 180 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 1 180 - -
Car06g01590 180 Gene3D - 91 179 IPR014721 -
Car06g01590 180 PANTHER RIBOSOMAL S SUBUNIT 1 180 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car06g01590 180 Pfam Ribosomal protein S5, C-terminal domain 101 171 IPR005324 GO:0003735|GO:0005840|GO:0006412
Car06g01590 180 SUPERFAMILY Ribosomal protein S5 domain 2-like 94 172 IPR020568 -
Car06g01590 180 TIGRFAM rpsE_bact: ribosomal protein uS5 23 177 IPR005712 GO:0003735|GO:0006412|GO:0015935
Car06g01590 180 Hamap 30S ribosomal protein S5 [rpsE]. 1 177 IPR005712 GO:0003735|GO:0006412|GO:0015935
Car06g01590 180 Gene3D - 8 85 - -
Car06g01590 180 ProSitePatterns Ribosomal protein S5 signature. 41 73 IPR018192 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01590 24 180 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 31.515 3.49e-17 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01590 06 15637657 15640403 Car06g01590 06 15637657 15640403 ECH