LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g01590	ATGGACTCGAAGGCAAAGAAGATGAGTGGGTTCGGTTCGGGATTGAAGAAGGAAAAGATAAGAGATGGGTTTGAAGAAAGGGTGGTTCAAGTTAGGAGGGTTACTAAGGTTGTGAAAGGAGGGAAACAAATGAGGTTTAGGGCTATAGTTGTTGTTGGTGATAAGAAAGGACAAGTTGGTGTTGGTGTTGGGAAGGCTAAGGAAGTTATTGCTGCTGTTCAGAAAGCTGCTATTAATGCTAGGAGGAATCTTGTTAGAGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGATCTGACGGAGATGTTGGAGCGGCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGTGTTATTGCAGGTGGGTCTGTGCGAATTGTTCTTGAAATGGCAGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGGGCAACTGTTGTTGCAGTGCAGAGAATGAGGCAGTACAGTGAGGTCTCTGCGGAGCGTGGGATCCCTATGGAAGAGTTATGGAAGTAA	543	0.4586	MDSKAKKMSGFGSGLKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKKGQVGVGVGKAKEVIAAVQKAAINARRNLVRVPMTKYLTFPHRSDGDVGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVVAVQRMRQYSEVSAERGIPMEELWK	180

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g01590	180	ProSiteProfiles	S5 double stranded RNA-binding domain profile.	24	87	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Car06g01590	180	SUPERFAMILY	dsRNA-binding domain-like	20	89	-	-
	Car06g01590	180	Pfam	Ribosomal protein S5, N-terminal domain	24	88	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Car06g01590	180	PANTHER	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	1	180	-	-
	Car06g01590	180	Gene3D	-	91	179	IPR014721	-
	Car06g01590	180	PANTHER	RIBOSOMAL S SUBUNIT	1	180	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Car06g01590	180	Pfam	Ribosomal protein S5, C-terminal domain	101	171	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Car06g01590	180	SUPERFAMILY	Ribosomal protein S5 domain 2-like	94	172	IPR020568	-
	Car06g01590	180	TIGRFAM	rpsE_bact: ribosomal protein uS5	23	177	IPR005712	GO:0003735\|GO:0006412\|GO:0015935
	Car06g01590	180	Hamap	30S ribosomal protein S5 [rpsE].	1	177	IPR005712	GO:0003735\|GO:0006412\|GO:0015935

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g01590	24	180	Cytoplasmic Ribosomal Protein Gene Family	AT1G58380	31.515	3.49e-17	75.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g01590	K02988		-	gmx:100787105	270.011

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car06g01590	06	15637657	15640403	Car06g01590	06	15637657	15640403	ECH

Showing 1 to 1 of 1 entries