Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01588 ATGGACCCGAAAATACCAAAGGAAGATCTTTTTCGAGTCTTTCTTTATGATTACCTCAAGAAGCGTGGATTCTCCCAAACTGCCAAGACTTTACGAAATGAAGCTCAAATTACTGCACGAACTTCCTCTCAGTTTAATCGTCCATATGATCCATATGGATTCTTGTACGAATTTTGGGTTTCATTCTATGACTTATATCAAGCTTGGATAATACCAGGACTCTCCAGGAAGAGTGATCAGGCCACAAATGTTGGTGCTTTAATTGACTCTATCCCTCAAATAATTCGTGAACGATATTCTATTCGATGTCTTTCACGTTGTTCAAGCAAACAGACGCTTTTGTCCTGCGATTTTTCATCAGATGGAATGATTGTAGCAAGTGGAGGGATTGGGATGAAGCCTTTCCTGTGCTACGCGGAGACCTGTGATGCTGTTACTACATCAGAGTCACATTCATCTACCATCTTAGATGTTAGATTTCAACCAGAATCAAATTTATTTGCAACAGCTTCTGCTGATAAAACAGTAAAATTATGGAATGCAAGAAGACCTGCAACCGTATTGTACGATTTTGTTGGACATAATTGGATAGTAAAATCATTAGACTTCCACCCAACAGAAGGAATTCTTTGCTCGTCTGATACCCACGGTGTAATTGAAGAATGGAATCTTGATCGGCGTGTTAGGATGAACACCTTTAAGGCAGGTGGAAGCCTAGTGAGATTTCAGCCTGGATCAGGGAGGATTTTGGCATCTGTTAATCGAAATGTTATCACCTTACGCGATTTCAAGACTTGGACTGTTGAGAAGCGTTTTCAGGGACATGTCAAAGATATTCGTTCCATATGTTGGGATGTCACTGGACAAACAATTGCCTCTGTCAGCGAAGATGAAGTACGTGTCTGGACGATTAACATGGAAGGAAAATGCTTATATGAGTATCCATCAAAAGGGAAGAGGTTTCAGACTGTCATATTCCATCCTCGATTCCGAAACGTCTTAGTTGTTGGTGGTTTTCAGAATTTGGAATTGTTAATTCTTGATACCGGGGAAACACGCAGTATAACGGCCTCTGATTTATCGATTACTGGACTAGCAGCTTGTACGGAAAGTAAACTCATTGCATCAGCTGGCAATGACTCTATGGTGAAGATATGGAAATGA 1164 0.4055 MDPKIPKEDLFRVFLYDYLKKRGFSQTAKTLRNEAQITARTSSQFNRPYDPYGFLYEFWVSFYDLYQAWIIPGLSRKSDQATNVGALIDSIPQIIRERYSIRCLSRCSSKQTLLSCDFSSDGMIVASGGIGMKPFLCYAETCDAVTTSESHSSTILDVRFQPESNLFATASADKTVKLWNARRPATVLYDFVGHNWIVKSLDFHPTEGILCSSDTHGVIEEWNLDRRVRMNTFKAGGSLVRFQPGSGRILASVNRNVITLRDFKTWTVEKRFQGHVKDIRSICWDVTGQTIASVSEDEVRVWTINMEGKCLYEYPSKGKRFQTVIFHPRFRNVLVVGGFQNLELLILDTGETRSITASDLSITGLAACTESKLIASAGNDSMVKIWK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01588 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Car06g01588 387 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 387 IPR044716 GO:0003714
Car06g01588 387 Gene3D - 96 238 IPR015943 GO:0005515
Car06g01588 387 Gene3D - 239 387 IPR015943 GO:0005515
Car06g01588 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Car06g01588 387 Pfam LisH 16 35 IPR006594 GO:0005515
Car06g01588 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 387 - -
Car06g01588 387 ProSiteProfiles LIS1 homology (LisH) motif profile. 16 39 IPR006594 GO:0005515
Car06g01588 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Car06g01588 387 Pfam WD domain, G-beta repeat 361 387 IPR001680 GO:0005515
Car06g01588 387 Pfam WD domain, G-beta repeat 270 302 IPR001680 GO:0005515
Car06g01588 387 Pfam WD domain, G-beta repeat 149 180 IPR001680 GO:0005515
Car06g01588 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 387 IPR001680 GO:0005515
Car06g01588 387 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 12 387 - -
Car06g01588 387 SUPERFAMILY WD40 repeat-like 111 387 IPR036322 GO:0005515
Car06g01588 387 SMART WD40_4 184 223 IPR001680 GO:0005515
Car06g01588 387 SMART WD40_4 348 387 IPR001680 GO:0005515
Car06g01588 387 SMART WD40_4 100 138 IPR001680 GO:0005515
Car06g01588 387 SMART WD40_4 265 303 IPR001680 GO:0005515
Car06g01588 387 SMART WD40_4 141 180 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01588 Car-Chr6 15629621 15631749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01588 91 304 U-box Gene Family AT2G33340 25.541 3.65e-14 72.0