Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01574 ATGCAAAGGCAACAAGTAAAGAAAGAAGAGGACGACGACGGCCCGCCACCTGGATGGCAACCTATCCCGACTCCGCCACAGCCACTTCCATCCGTTGGTTTTGCTCAAATGGTTTGTGGTTCATGTCGTCGCCTGCTTGCATATCAACGAGGGGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTTAACATTGTATTAGAAGCTGATCAGGTAGGGCAAGTTAAGTGTGGGAGCTGTGCGGTATTGCTAATGTACCCATATGGTGCTTCGCAAGTTAGGTGTTCATCGTGCCGGTTTGTGACAGAAATCGGGGCACACAACAAGCGGCCTCCGTGGTCTGTACAAAGTAAACCAACTCCTCCCAAAACTGGTTGTTAG 381 0.4961 MQRQQVKKEEDDDGPPPGWQPIPTPPQPLPSVGFAQMVCGSCRRLLAYQRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGAHNKRPPWSVQSKPTPPKTGC 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01574 126 Pfam LSD1 zinc finger 77 101 IPR005735 -
Car06g01574 126 Pfam LSD1 zinc finger 39 63 IPR005735 -
Car06g01574 126 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 36 66 IPR005735 -
Car06g01574 126 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 74 102 IPR005735 -
Car06g01574 126 MobiDBLite consensus disorder prediction 1 15 - -
Car06g01574 126 PANTHER PROTEIN LSD1 22 120 IPR040319 -
Car06g01574 126 PANTHER PROTEIN LOL2 22 120 - -
Car06g01574 126 MobiDBLite consensus disorder prediction 1 29 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Car06g01574 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01574 - - gmx:100780865 198.749