Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01572 ATGTCTCAGTGCAGATTTATCCGCTGGAGCCTTCCCGAGGAAAGGGATGGTCCACTTACCACTTACCAGTCTGGTGAACTCATGAAACCATCGTCACACACATCTTCTTCCTTTATACTCTCTTCCTCAACCTTCTCTTCTCTACATACCCAAACGGAGGATTACACTTTATTCCCCAACTTATCCTCTCTCTCGGGGCTAAAGAAACACCAAAAACCAAAGTTGCAAGATTTTGCACATGAACCAATAGTCACCCTATGTGGCCACCTCTACTGTTGGTCCTGCATCTACAAGTGGCTATTTGTGCAAAGTGCTTCTCTTGGACCTGATGAGCCTCCACAGTGCCCAGTTTGCAAGGATGATATATCTCACACCACAATGGTTCCTCTTTATGGCAGGGGACAGACCGCAAATCACCGTGATTGCAACCGCGACACAAAAGCTACCCTTCGAGATATTTCTGTACCACCAAGACCACCTGCTTCAGGGATTCAGTCCCTATTGGCAAAGTTAACATCACCTCAAAGTGTTCAGCAGCTTCCGTATCGTAATCCTTATCAGAATCAACATATTAACACTCCTCCATACCAAGAGAATGATACATCACAAATGCTCAATGTGGGTGCCTTTATGACACCAGTATTACCCCACTTATTATTTGGGAACTCAGAAAATTTACATCATGATATGATGGAAAGTAATAGTCCTAGGTGGAGAAGGCAAGAGATGCAGGCAAACAAATCATTGAACAGAATTTCGTATTTTCTCTTTTGTTGCTTTTTCCTGTGTTTTATCCTCTTCTGA 804 0.4341 MSQCRFIRWSLPEERDGPLTTYQSGELMKPSSHTSSSFILSSSTFSSLHTQTEDYTLFPNLSSLSGLKKHQKPKLQDFAHEPIVTLCGHLYCWSCIYKWLFVQSASLGPDEPPQCPVCKDDISHTTMVPLYGRGQTANHRDCNRDTKATLRDISVPPRPPASGIQSLLAKLTSPQSVQQLPYRNPYQNQHINTPPYQENDTSQMLNVGAFMTPVLPHLLFGNSENLHHDMMESNSPRWRRQEMQANKSLNRISYFLFCCFFLCFILF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01572 267 Pfam Zinc finger, C3HC4 type (RING finger) 80 118 IPR018957 GO:0046872
Car06g01572 267 ProSiteProfiles Zinc finger RING-type profile. 87 119 IPR001841 -
Car06g01572 267 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Car06g01572 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 77 267 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car06g01572 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 130 IPR013083 -
Car06g01572 267 SUPERFAMILY RING/U-box 77 131 - -
Car06g01572 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 77 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01572 Car-Chr6 15454628 15457629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01572 77 267 C3H Transcription Factor Family AT4G28270 35.000 8.48e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01572 K10666 - gmx:100779793 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01572 06 15454628 15457629 Car01g00315 01 2377766 2379915 PCT