Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01571 ATGGCGAGTCGTTTCTTTGGATCTTCATCCTCTTCGATCGACCTGATCGTAACCAACACGCCCTCTACCGAACTCGCCCTAACCAACCTCGCCTTCTGCTCCGCCTCAGATCTTCCCAAATTCGCTATCCCCGGTCACAGCAACCTACACCTTGCTTCTATCGGCGATTCATTCGTTTTTTCCCTCCAAGCTCATGAAAGCATACGCGGTGGACATATTGCGTTGAATTCAATTCAACGTCGATGTGCAAAAGTTTCTGCTGCAGAATCTGTACCTGTGAGCCGATTTGTGCCGCCTGAAAACTTCGACCTGGCATTTCTAACCCTTGAATTGGACTTCATTAAAAGGGCTGGAAGCAGGAGTGAACAGattgatgctgttgtACTGGCCAAGCAACTTCGGAAGAGATTTTTGAACCAGGTAATGACAACAGGGCAGAGAGTGCTATTCGAGTATCAAGGAAACAACTACAGCTTTACGGTCAGTCAAGCTACAGTTGGGGGCCGAGAAAAGTCCGACTCTATCGAAAGAGGGATGATTTCAGACGAGACGTTCATTGTCTTTGAAGCGTCACGTGACAGTGGAATAAAGATTATAAATCAGCGCGAGGGTACTACAAGTAACATTTTCAAGCAAAAGGAATTTAACCTTGAGTCTCTGGGTATTGGTGGCCTGGGAGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCGTCTCGTGTTTTCCCTCCTCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACTCTTATGGCACGGCAAATTGGAAAAATTTTGAATGGAAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTTAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACTCTAGGAGATGAAAGTGATTTGCATGTTATTATATTTGATGAAATTGATGCTATTTGTAAGTCCAGAGGCTCAACTCGAGATGGTACAGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTCGAGTCACTAAACAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCACTCTTAAGACCAGGGCGGTTGGAAGTCCAAGTTGAGATAAGCCTCCCTGATGAAAATGGCCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGATAATTCTTTTCTAGCTCCAGATGTGAATCTTCAAGAGCTTGCTGCTCGAACTAAAAACTATAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTTTCATATGCTTTAAATAGACAATTGAGTTTAGAGGATCTCACTAAGCCAGTGGAGGAGGAGAATATTAAGATTACGATGGATGACTTTTTGAACGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCGACTGACGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTCATCAGAGAGCAATGCTAATTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCCCTTGTTACTTGTCTTCTGGAAGGTTCTCGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTAGGTATTGATAGTGACTTCGCATATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACTAAATGTGCCCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCTTTGAGTGTTATTATTCTTGATGACATTGAGAGATTATTGGAGTATGTGGCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACACTACTGGTCCTACTCAAAAAGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACAACAAGTGAAGTGGATTTCTTGGACTCAATTGGATTTTGCGATACCTTCTCTGTAACTTACAATGTTCCTACCTTGAACACAAATGATGCAAAGAAGGTCCTAGAAAAGTTGAACGTTTTTGCTGAAGAAGATGTTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGCACAAGGTGCACAAGGTGGATCTGCAGAAGCTATCTATTCTGGCCAAGAGAAGATCAATATATCTCATTTCTATGATTGCCTCCAGGATGTTGTCAGATTATAA 2238 0.4223 MASRFFGSSSSSIDLIVTNTPSTELALTNLAFCSASDLPKFAIPGHSNLHLASIGDSFVFSLQAHESIRGGHIALNSIQRRCAKVSAAESVPVSRFVPPENFDLAFLTLELDFIKRAGSRSEQIDAVVLAKQLRKRFLNQVMTTGQRVLFEYQGNNYSFTVSQATVGGREKSDSIERGMISDETFIVFEASRDSGIKIINQREGTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKITMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIHQRAMLIVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFAYVKIVSAETMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKKLPPKGKKLMVIGTTSEVDFLDSIGFCDTFSVTYNVPTLNTNDAKKVLEKLNVFAEEDVDSAAEALNDMPIKKLYMLIEMAAQGAQGGSAEAIYSGQEKINISHFYDCLQDVVRL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01571 745 SUPERFAMILY ADC-like 13 96 IPR009010 -
Car06g01571 745 Pfam Cell division protein 48 (CDC48), domain 2 123 168 IPR004201 -
Car06g01571 745 Gene3D - 400 487 - -
Car06g01571 745 PANTHER BNAA03G50350D PROTEIN 9 39 - -
Car06g01571 745 PANTHER BNAA03G50350D PROTEIN 66 745 - -
Car06g01571 745 Gene3D - 9 96 - -
Car06g01571 745 Gene3D - 496 667 IPR027417 -
Car06g01571 745 PANTHER VESICULAR-FUSION PROTEIN NSF 9 39 IPR039812 GO:0016887|GO:0035494
Car06g01571 745 PANTHER VESICULAR-FUSION PROTEIN NSF 66 745 IPR039812 GO:0016887|GO:0035494
Car06g01571 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Car06g01571 745 Pfam AAA+ lid domain 425 480 IPR041569 -
Car06g01571 745 Pfam ATPase family associated with various cellular activities (AAA) 539 653 IPR003959 GO:0005524|GO:0016887
Car06g01571 745 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
Car06g01571 745 Gene3D - 100 198 - -
Car06g01571 745 CDD AAA 256 399 - -
Car06g01571 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 709 IPR027417 -
Car06g01571 745 SMART AAA_5 254 401 IPR003593 -
Car06g01571 745 SMART AAA_5 534 667 IPR003593 -
Car06g01571 745 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Car06g01571 745 Gene3D - 209 399 IPR027417 -
Car06g01571 745 SUPERFAMILY Cdc48 domain 2-like 99 203 IPR029067 -
Car06g01571 745 CDD AAA 519 607 - -
Car06g01571 745 Coils Coil 742 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01571 Car-Chr6 15436931 15452482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01571 222 473 Calmodulin-binding Proteins AT3G56690 32.677 4.09e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01571 K06027 - gmx:100779259 1280