Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01570 ATGGGTGAAAATGTGATGGAGCTAAACTTTGGTTCATTAGCCAATTTTTCTTCTAGCTCGTCATCCCCTAAGCCATTACGTTGCCCCGCACCATTTCTATTGAAAACCTATGATTTGTTGGAAGAACATAGTGAAATTGTGTCATGGAATGAACAAGGAAATGCTTTTGTTGTGTGGTCTCCAGCTGAATTCTCTGAGCTCACCTTGCCTAGATATTTCAAACACAATAATTTCTCTAGCTTTATTCGACAATTGAATACATATGGATTTAAGAAAATATCATCTAAAAGATGGGAATTTCAGCATGAGAAATTTCAAAAGGGTTGCAAGCACATGCTGGTTGAAATAAGTAGGAAAAAGTGTGAGCCAAGTGTGTTTCCTTCATACCTCAAGTCTTGTTCAGAGGAAAATGCAATGACTAATTCATCAGTGGAAGAAAACATTAGTAACAATCATGAATTACTCATGGAAGAGAACAAGAACCTTAAGAAGGAGAGATTGAAGTTGCAAATGCAAATAGAAGAATGTAAGACACTAGAAATGAAGTTGTTGGAGTGTCTTTCTCAATATATGGATAGCCAACAAAATAAAGCTAGGAGACTTTGTTAA 609 0.3596 MGENVMELNFGSLANFSSSSSSPKPLRCPAPFLLKTYDLLEEHSEIVSWNEQGNAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFQHEKFQKGCKHMLVEISRKKCEPSVFPSYLKSCSEENAMTNSSVEENISNNHELLMEENKNLKKERLKLQMQIEECKTLEMKLLECLSQYMDSQQNKARRLC 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01570 202 SUPERFAMILY "Winged helix" DNA-binding domain 29 119 IPR036390 -
Car06g01570 202 Coils Coil 145 182 - -
Car06g01570 202 Gene3D - 27 120 IPR036388 -
Car06g01570 202 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 202 IPR027725 -
Car06g01570 202 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01570 202 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01570 202 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01570 202 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 19 202 - -
Car06g01570 202 Pfam HSF-type DNA-binding 32 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01570 202 SMART hsfneu3 28 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01570 Car-Chr6 15430787 15433002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01570 28 192 HSF AT4G36990 40.933 6.25e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car06g01570 HSF_DNA-bind 1.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01570 K09419 - gmx:100783723 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01570 06 15430787 15433002 Car06g01570 06 15430787 15433002 ECH