Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01561 ATGCATTTTTCTGAAAAAGACTTGAGATTCGCCACTGATAATTATCATCCAAGCAAAAAGATAGGACGGGGAGGTTTTGGCACTGTTTACCAGGGAACCTTAAAAGATGGAAGACAAGTAGCAGTGAAGAACCTTTCAGTTGGATCAAAGCAGGGTGTTCGTGAATTTTTAACTGAAATTAAAACTATATCACACATTAAGCATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAATCTAATCGTACATTAGTTTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTACTAGGAAAGAGAAGTACAAACCTCGAGCTAGACTGGGGAAAAAGATCTAACATTTGTAGAGGTACGGCTAGAGGTCTTGCATTTCTCCATGAAGAAGTTGTTCCACACATTGTGCACAGAGACATCAAGGCTAGCAACATATTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTGGCTAAGTTATTTCCAGATGACATCACTCATATTAGCACAAGAATTGCTGGAACCACCGGTTACTTAGCACCCGAATATGCCATGGGTGGGCAGTTAACCATGAAGGCTGATGTATATAGTTTTGGGGTTCTTATACTTGAAATAATCAGCGGCAAAAGCAGTGTGAGGACAAACTGGGGAGGGTCAAACAAATTCCTTTTAGAATGGGCCTGGCAACTTCATGAGGAGGGGAAATTGCTGGAGCTTGTGGATCCAGAGATGGTTGAATTTCCTGAGGAAGAAGTGATTAGGTACATGAAAGTAGCTTTCTTCTGCACGCAAGCAGCAGCAAGCAGAAGGCCATTGATGTCACAGGTTGTTGATATGCTCTCCAAGAAAATAAGGCTCAATGAAAAGCAACTTACGGCACCAGGGTTCTTCCAGGATTCAGGTGAATCCTCTCTAAAGAAGTCATCCTTTGAGTCCACAAGCAATCAGTTTAGCTCAGCCCCTGCCAGTTTTACTCAGGTCATCCCACGGTGA 1008 0.4206 MHFSEKDLRFATDNYHPSKKIGRGGFGTVYQGTLKDGRQVAVKNLSVGSKQGVREFLTEIKTISHIKHPNLVELVGCCVQESNRTLVYEYVENNSLDRALLGKRSTNLELDWGKRSNICRGTARGLAFLHEEVVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISGKSSVRTNWGGSNKFLLEWAWQLHEEGKLLELVDPEMVEFPEEEVIRYMKVAFFCTQAAASRRPLMSQVVDMLSKKIRLNEKQLTAPGFFQDSGESSLKKSSFESTSNQFSSAPASFTQVIPR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01561 335 Gene3D Transferase(Phosphotransferase) domain 1 91 300 - -
Car06g01561 335 MobiDBLite consensus disorder prediction 312 335 - -
Car06g01561 335 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Car06g01561 335 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Car06g01561 335 ProSiteProfiles Protein kinase domain profile. 15 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01561 335 PIRSF ILK 2 298 - -
Car06g01561 335 Pfam Protein kinase domain 15 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01561 335 SMART serkin_6 15 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01561 335 CDD STKc_IRAK 21 287 - -
Car06g01561 335 SUPERFAMILY Protein kinase-like (PK-like) 2 308 IPR011009 -
Car06g01561 335 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 328 - -
Car06g01561 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Car06g01561 335 PANTHER - 7 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01561 Car-Chr6 15354479 15358773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01561 3 334 Receptor kinase-like Gene Family AT1G56120 50.904 4.60e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car06g01561 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01561 - - gmx:100788143 584.334