Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01543 ATGGACAGTACAGATTCATCATCTTGCTCTCCGCACCCCCACCTCCCACCAGGTTTTCGATTTCACCCCACCGATGAAGAACTTGTCGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCCCTTCCAGTAGCCATCATAGCTGAAATTGATCTCTACAAGTTCGATCCTTGGGAACTACCAAGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCCAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACAACTGATGGGCACATGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGTGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAATATAGGCTTATCACTGATCACAATCATAATATTCATTCCTATAATGCAACCTCAAAAACTCCTCCTCTGCCTGCTGATCCTCCAAACCTTAACAAGAAGAATTCCCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAAAAAAGCAACAGTAGCACAATGCCAAGACCACCTCTAATGGATCAATATGATAAGGAGCTATCAATGGATCATCATCACACAATGCTACCACTGACTAATATGCAACAGAACAACACTAAACTTCCATCTTCAAGAAGCACAAGTAGTTATGGACTTGAAAATGATGACAACTTCTTCGATGGAATCTTAGCAGCTGATCAACATCAACATCAACATCATCATGAAGAAATGCAAAATGGTTGTGGTTCTCATGACATAAACTCAAAGAATGATAACAATGACTCATTCCCCATGAAACGTGCATTGACTGCATCATCACAATTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCTAGTAAGCGATTCCATGGAGATCTTAATAGTGGAAATAGCAATGCTGAGGAAAATAATTCATTTGTTTCACTGCTTAGTCAGCTTCCAACAACCACAACTTTTCATCCAAATGCGATTCTTGGGGATGCTGTAATCAGGCAACAATTTCAACTTCCGAATATAAATTGGAACTGA 1095 0.4055 MDSTDSSSCSPHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTTDGHMKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNHNIHSYNATSKTPPLPADPPNLNKKNSLRLDDWVLCRIYKKSNSSTMPRPPLMDQYDKELSMDHHHTMLPLTNMQQNNTKLPSSRSTSSYGLENDDNFFDGILAADQHQHQHHHEEMQNGCGSHDINSKNDNNDSFPMKRALTASSQFWNETGSPGSSSSSKRFHGDLNSGNSNAEENNSFVSLLSQLPTTTTFHPNAILGDAVIRQQFQLPNINWN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01543 364 MobiDBLite consensus disorder prediction 295 322 - -
Car06g01543 364 Gene3D NAC domain 24 193 IPR036093 GO:0003677|GO:0006355
Car06g01543 364 ProSiteProfiles NAC domain profile. 15 188 IPR003441 GO:0003677|GO:0006355
Car06g01543 364 PANTHER NAC TRANSCRIPTION FACTOR 56 1 339 - -
Car06g01543 364 MobiDBLite consensus disorder prediction 1 20 - -
Car06g01543 364 SUPERFAMILY NAC domain 10 188 IPR036093 GO:0003677|GO:0006355
Car06g01543 364 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 339 - -
Car06g01543 364 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01543 Car-Chr6 15134768 15136771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01543 1 363 NAC Transcription Factor Family AT1G61110 52.910 8.66e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car06g01543 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01543 - - gmx:100797132 484.567