Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01524 ATGAACGATTTGTTCTCAAATTCCTTCAAAAAGTACACTGATTTAAAGGAACAAGCTTACATTGATGATGTTGAATCAGGGAATAAAGAAAGTGTGAATCTGGACAAATTCTTCGAAGACGTGGAGAATGTAAAAGAAGATATGAAAACGGTGGAGAAACTTTATAAAAATTTACAAGAAGCAAATGAAGAAAGTAAAACGGTTCACAATGCTAAAACCATGAAAGAACTTCGATCTCGAATGGACAAAGATGTAGAACAAGTACTGAAACGTGTGAAATTCATTAAAGGAAAACTAGAAGCTTTGGATCGTTCCAATGTAGCTAATAGAAACATTGCAGGGTGTGGTCCAGGTTCATCAGCAGATAGAACTAGAACTTCAGTGGTTAGTGGTTTAGGTAAGAAATTGAAAGATATGATGGATGATTTTCAAGGGTTGAGAGCAAGAATGCAATTTGAGTATAAAGAAACAATTGAACGTAGATATTTTACAATAACAGGGGAGAAAGCAGATGAAGAAACTATAGAGAATTTGATATCAAGTGGTGAAAGTGAAAGTTTTTTGCAAAAAGCAATTCAAGAACAAGGGAGGGGTCAAATTATGGATACAATATCTGAAATTCAAGAAAGACATGATGCTGTTAAGGAAATAGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTAGATATGGCAGCTTTGGTTGACTCTCAAGGACAACAACTTAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTCAGAAGAGGGACAGATCAACTTGAAGATGCTAAAGTGTATCAAAAGAGTTCTAGGAAGTGGACATGTTATGCAATACTTCTTTGTATTGTTCTTGTAGTTGTCATTCTCTTTCCTCTCTTGATATCATTTTTACCTCAATTCTTTAGATGA 918 0.3431 MNDLFSNSFKKYTDLKEQAYIDDVESGNKESVNLDKFFEDVENVKEDMKTVEKLYKNLQEANEESKTVHNAKTMKELRSRMDKDVEQVLKRVKFIKGKLEALDRSNVANRNIAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQFEYKETIERRYFTITGEKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVDSQGQQLNNIESHVAHASSFVRRGTDQLEDAKVYQKSSRKWTCYAILLCIVLVVVILFPLLISFLPQFFR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01524 305 PANTHER T-SNARE-RELATED 10 295 - -
Car06g01524 305 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Car06g01524 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Car06g01524 305 CDD SynN 34 191 IPR006011 GO:0016020
Car06g01524 305 Gene3D - 194 297 - -
Car06g01524 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Car06g01524 305 SMART SynN_4 29 155 IPR006011 GO:0016020
Car06g01524 305 PANTHER SYNTAXIN 10 295 IPR045242 -
Car06g01524 305 Gene3D - 34 161 - -
Car06g01524 305 Coils Coil 34 71 - -
Car06g01524 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car06g01524 305 Pfam SNARE domain 241 292 IPR000727 -
Car06g01524 305 CDD SNARE_syntaxin1-like 203 264 - -
Car06g01524 305 SMART tSNARE_6 199 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01524 Car-Chr6 14866978 14867895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01524 1 296 SNARE and Associated Proteins AT1G61290 80.743 3.25e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01524 K08486 - gmx:100805869 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01524 06 14866978 14867895 Car01g00261 01 1965336 1966860 PCT