Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01500 ATGGCAGTTTCAGAACCAAACGGCGACGTTTTCCCATGGCTGAAATCCATGGCAGTAGCACCAGAGTACAGACCGACAGCGTCGGAGTTCGAAGATCCGATCGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATACGGAATCTGCAAAATAATTCCTCCTTTTCCTCCTTCACCTAAGAAAACTGCCATAGCCAACCTAAACAGGTCACTTCCTAATTCCACATTCACGACACGTCAGCAACAGATCGGGTTCTGTCCACGGAAGTCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACACTTTCTCCGAGTTCGAAGCTAAAGCCAAATGGTTCGAGAAATGTTACATGAAGAAGCACAATAAAAAGGGTATTAATGCTGCTTATGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCAAAAGTGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCTGGGGTGACTTCACCTATGGTTTATCTTGCTATGTTTTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATCTTCATAGTTTGAATTATCTTCATATAGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGATGTTGTTGTTGCTTTTGAGGATGTTGTTAGGggttcatga 657 0.4323 MAVSEPNGDVFPWLKSMAVAPEYRPTASEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLPNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFSEFEAKAKWFEKCYMKKHNKKGINAAYVAHSAWNMRGVSRAKVSLLRFMKEEIPGVTSPMVYLAMFFSWFAWHVEDHDLHSLNYLHIGASKTWYGVPRDVVVAFEDVVRGS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01500 218 Pfam jmjN domain 21 54 IPR003349 -
Car06g01500 218 Gene3D Cupin 131 218 - -
Car06g01500 218 Gene3D Cupin 4 130 - -
Car06g01500 218 SUPERFAMILY Clavaminate synthase-like 108 214 - -
Car06g01500 218 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 129 - -
Car06g01500 218 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 216 - -
Car06g01500 218 ProSiteProfiles JmjC domain profile. 137 218 IPR003347 -
Car06g01500 218 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Car06g01500 218 Pfam JmjC domain, hydroxylase 167 216 IPR003347 -
Car06g01500 218 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 131 216 - -
Car06g01500 218 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 129 - -
Car06g01500 218 SMART JmjN_1 19 60 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01500 Car-Chr6 14613648 14614659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01500 135 216 C2H2 Transcription Factor Family AT5G04240 59.756 1.26e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car06g01500 JmjC 7.8e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01500 - - mtr:MTR_3g075210 353.214