Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01495 ATGGGAAGAACACCTTGCTGTGAAAAGAATGGCCTCAAGAGAGGACCATGGACACAAGAAGAAGACCAAAAACTCATTGATTATATTCACAAACATGGTTATAGCAACTGGAGATTACTCCCAAAAAATGCTGGGTTGCGAAGGTGTGGAAAGAGTTGTCGTCTTCGTTGGACAAACTATCTTCGACCCGATATAAAGCGAGGTCGATTCTCTTTCGAAGAGGAGGAAACCATAATACAACTTCATAGTATTCTTGGCAACAAGTGGTCTTGTATTGCTTCTAGGCTTCCCGGAAGAACGGACAATGAAATAAAAAACTATTGGAACACTCACATTAGGAAAAGACTCTTAAAAATGGGAATTGATCCAGTGACACATAATCCACGCCTTGATCTTTTGAACCTTTCTTGTATCCTAAATTCATCTCTTTATGGCTCTGTTTCATCACAAATGAACAACATCCAAAGGCAAATTGGTACACAGCCATTAGTGAACCCTGAGATTCTAAAGTTTGCTTCATCACTATTCAACTCTCAAAATGGACAAGAGATTCTCCAAATTGATTATCAGAACCAACAAGTTTCACACTCAAACATGTTGAATCCACCTTATGATTATTCATACTCATCATTTTTCAGTGAAATTGGTTTCCAACAACAACATGAACATGCTCAATTAAGTGATGATTTGCATTGCAATGAAATTTCTTCAAGTAATAAAAATGAGGATTATTATGTGCATCAATTACCAAACTATAATAATTACTACATTTCTGACTATCATGAAAATGATCTTATGAACCCTCACATATCAGAAATCTCAACCTTTAGTTCCAATAATATCAACCAGAACTTCAATTTCAGTTCAGTTCTATCTACTCCTTCATCAAGTCACACACCTTTGAATTCGAAGTCAACATATATCAATGAAAGCAACAACACTGAAGATGAGACAGAGAGCTATGTTAGAAGCAACATATTTCATGTAATGTGA 993 0.3595 MGRTPCCEKNGLKRGPWTQEEDQKLIDYIHKHGYSNWRLLPKNAGLRRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSCIASRLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHNPRLDLLNLSCILNSSLYGSVSSQMNNIQRQIGTQPLVNPEILKFASSLFNSQNGQEILQIDYQNQQVSHSNMLNPPYDYSYSSFFSEIGFQQQHEHAQLSDDLHCNEISSSNKNEDYYVHQLPNYNNYYISDYHENDLMNPHISEISTFSSNNINQNFNFSSVLSTPSSSHTPLNSKSTYINESNNTEDETESYVRSNIFHVM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01495 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car06g01495 330 CDD SANT 69 112 IPR001005 -
Car06g01495 330 Gene3D - 7 67 - -
Car06g01495 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car06g01495 330 CDD SANT 16 61 IPR001005 -
Car06g01495 330 SMART sant 66 114 IPR001005 -
Car06g01495 330 SMART sant 13 63 IPR001005 -
Car06g01495 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g01495 330 PANTHER TRANSCRIPTION FACTOR MYB41 1 324 - -
Car06g01495 330 Gene3D - 69 116 - -
Car06g01495 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car06g01495 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g01495 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g01495 330 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car06g01495 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01495 Car-Chr6 14571443 14572855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01495 1 189 MYB Transcription Factor Family AT4G21440 75.000 5.22e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g01495 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01495 K09422 - gmx:100810143 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01495 06 14571443 14572855 Car06g01495 06 14571443 14572855 ECH
Car06g01495 06 14571443 14572855 Car01g00246 01 1849428 1850807 PCT