Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g01484 | ATGGCGAGTCATCTCCCTGACCACTTCAAGTGTCCAATTTCTCTTGAAATAATGTCCGACCCAGTCATCCTATCTTCCGGTCACACATTCGATCGTCCTTCCATCCAACGCTGGTTAGACGCCGGTCACAGAACTTGTCCAATTACCAAACTACCCCTCCCTAATAATCCTTCCCTCATCCCTAACCACGCTCTCCGAAGCTTAATCTCAACTTACACACTCCTCCCACCACTTAACCAAATTGTAATTTCCCAACCCGAAACCCTAATTTCATCTCTAACTTCTCCTTCGTCTTCCTCCGATTTCAAAATTGACTCGCTCCGACAACTCGCACGCTTTTCTAAACGCGACGCCGTCTTCCGCCGCCGTCTCGTTGATTCCGGTGCTGTCTCCGCCGTTCTATTCTGCCTCGATTCCTCCTTCGGTGATCCTAAGCTTCAGGAGAAGGCTCTCTCACTTCTTCTTAATCTCAGCCTCGACGACGACAGCAAGGTCGGACTTGTCGCCGAGGGAGCCATCGCCCGCGTCGTCGAATTCCTTCTCCGCGCGGCCTCGTCGGACTGCCGCGCTTTATCGGCGACGATAATCACGAGCCTCGCCGTGGTAGAAGTAAACAAGGCGACTATCGGTGCTTACCCGGGGGCAATCGGATCTCTGGTGGCGATTCTCCGGGACGGGAAGGGAAGAGAGAGGAAAGAAGCTGCCACCGCGCTTTACGCACTCTGCTGTTTTCCAGATAACCGAAAAAGGGCCGTGGATTGTGGCGCGGTGCCGATTTTACTGAGAAGTGTTGATTGTGGACTTGAAAGGGGTGTCGAGGTTATTGGTGTTTTGGCTAAGTGTAAAGAAGGTAGGGAACAATTGGAAAGTTATCGTGGTTGTGTGCAGATTCTGGTTCGTGTATTGAGAAATGGAAGCTCCAGAGGGATTCAGTATGCACTATTGGCACTTACTTCACTTTGTTTTCATAGCCAGGAAATGCTTATGGTTACCCTGCATGAAGGGGTTTTGGAAATCACTATTGGGTTGCTAGAGGATGATAATGAGAAAGTTAGGAGAAATTCATCCAATTTGATTCGGGTTCTTCGCGGTGGATGCAACCACCACCGGATGAGCTGA | 1119 | 0.5031 | MASHLPDHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDAGHRTCPITKLPLPNNPSLIPNHALRSLISTYTLLPPLNQIVISQPETLISSLTSPSSSSDFKIDSLRQLARFSKRDAVFRRRLVDSGAVSAVLFCLDSSFGDPKLQEKALSLLLNLSLDDDSKVGLVAEGAIARVVEFLLRAASSDCRALSATIITSLAVVEVNKATIGAYPGAIGSLVAILRDGKGRERKEAATALYALCCFPDNRKRAVDCGAVPILLRSVDCGLERGVEVIGVLAKCKEGREQLESYRGCVQILVRVLRNGSSRGIQYALLALTSLCFHSQEMLMVTLHEGVLEITIGLLEDDNEKVRRNSSNLIRVLRGGCNHHRMS | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g01484 | 372 | PANTHER | U BOX DOMAIN-CONTAINING | 3 | 367 | - | - | |
| Car06g01484 | 372 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 128 | 172 | IPR000225 | GO:0005515 | |
| Car06g01484 | 372 | SUPERFAMILY | ARM repeat | 87 | 362 | IPR016024 | - | |
| Car06g01484 | 372 | Gene3D | - | 78 | 270 | IPR011989 | - | |
| Car06g01484 | 372 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Car06g01484 | 372 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Car06g01484 | 372 | SMART | arm_5 | 281 | 322 | IPR000225 | GO:0005515 | |
| Car06g01484 | 372 | SMART | arm_5 | 324 | 364 | IPR000225 | GO:0005515 | |
| Car06g01484 | 372 | SMART | arm_5 | 160 | 201 | IPR000225 | GO:0005515 | |
| Car06g01484 | 372 | SMART | arm_5 | 116 | 159 | IPR000225 | GO:0005515 | |
| Car06g01484 | 372 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Car06g01484 | 372 | Gene3D | - | 271 | 363 | IPR011989 | - | |
| Car06g01484 | 372 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 74 | IPR013083 | - | |
| Car06g01484 | 372 | CDD | RING-Ubox_PUB | 9 | 50 | IPR045210 | - | |
| Car06g01484 | 372 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 3 | 367 | - | - | |
| Car06g01484 | 372 | SUPERFAMILY | RING/U-box | 4 | 73 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g01484 | Car-Chr6 | 14469206 | 14470854 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car06g01484 | 1 | 364 | U-box Gene Family | AT4G21350 | 58.333 | 1.60e-138 | 397 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g01484 | - | - | gmx:100785141 | 516.538 |