Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01454 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCTGGAAATATTGGAGGATCCTTCTTTCTTTCTTCATCAGTGGCATTCGAATTCTATTGATGAGTCTAACTCACTGCCAATAGCTGCTGCTTTTGGAGACACTTTACAACACCATTCATATATTTATCCAAACTTCAACCACAGAACTTCAGTGGAAACTGCTCAGACACTAGAGGCTCAATTCATTTCATACCCGAATCTTCTTTCGTTTGATGACTCATATCAAATAAACCAGTTTGGATTAGTGAAGCCTAAGGATGAGATGGTTTGTCCTAAAAACATCAGCAAAAATAGTTCTGACATGATCTCTAAAGGAACTTTGGAGGCAAAAAAAATAGCGACACGTCCTAAACTCTCTCAACCTCAATATCATATAATAGCTGAAAGAAAGCGGCGAGAGAAACTCAGCGAGAGATTCATCGCTCTGTCTGCCCTTGTTCCTGGACTACAAAAGATGGATAAAGCAACTGTTCTTGGAGATGCTATCAAGTACTTGAGGCAATTGCAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAAAACATGAAGAAAAACATGGAATCTGTGGTGGTTGTGAAGAAATCCCAACTACGTGATGATGTTGAAAACTCTTCTTCAGAATCCGACGGTTCCTTTGACGAGGAACTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAGTTCACTGTGAGAAAAGCAACGGGGTTTTGGAAAAAATAATCCATGAAATTGAGAGACTCCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGGAGCTGTGCACTTGATATAACCATTATTGCACAGATGGATATGGAATTTTGCATGACAGTGAAGGATTTTGTGAGAAACCTGCGCTCAGCTTTTACATCTTTCATGTGA 933 0.3955 MENISFIRGFPDLEILEDPSFFLHQWHSNSIDESNSLPIAAAFGDTLQHHSYIYPNFNHRTSVETAQTLEAQFISYPNLLSFDDSYQINQFGLVKPKDEMVCPKNISKNSSDMISKGTLEAKKIATRPKLSQPQYHIIAERKRREKLSERFIALSALVPGLQKMDKATVLGDAIKYLRQLQEKVRALEEEQNMKKNMESVVVVKKSQLRDDVENSSSESDGSFDEELPEIEARFCDRNVLIRVHCEKSNGVLEKIIHEIERLHLKVTNSSVMTFGSCALDITIIAQMDMEFCMTVKDFVRNLRSAFTSFM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01454 310 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Car06g01454 310 SMART finulus 137 186 IPR011598 GO:0046983
Car06g01454 310 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 67 309 - -
Car06g01454 310 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 3 66 - -
Car06g01454 310 PANTHER BHLH TRANSCRIPTION FACTOR 67 309 - -
Car06g01454 310 PANTHER BHLH TRANSCRIPTION FACTOR 3 66 - -
Car06g01454 310 Coils Coil 170 200 - -
Car06g01454 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 201 IPR036638 GO:0046983
Car06g01454 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Car06g01454 310 Gene3D - 131 205 IPR036638 GO:0046983
Car06g01454 310 CDD bHLH_AtNAI1_like 134 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01454 Car-Chr6 14046140 14048437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01454 116 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.061 4.72e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01454 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01454 - - vun:114179595 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01454 06 14046140 14048437 Car06g01454 06 14046140 14048437 ECH
Car06g01454 06 14046140 14048437 Car01g00199 01 1532081 1535607 PCT