Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01435 atgaggagaggaaagattgtgattgaaaggattgagaactcaagtagccggcaagtgacattcgcaaagagaaaaaaagggttgatgaagaaagctgaagaactatccattctatgtgatgcacaagttggattgattgtgttctcttgcACTCACAAGCTTTATGACTACGCAAGCTCAAGCATGGAATCTACTATCGAGCGTTATAGCAAGTTAGCTGAGGACCGTCATCACTCAATGAATCCTACTACTTGGGATGTCCAGTTTTGGCAAAGTGAAGCCTCAAACTTGAGGAAACAATTGCAGCACTTGAAGAATTGGCAAAGACAAGTGATGGGCCAAGAACTATCTGGTTTGGAATTTAATGAGCTGCAGCATCTAGAAAATCAATTGGAGATGAGTTTGAAAAACATTCGCATGAGAAAGGATCAAATGTTTAGTGATGAGATCAAAGAATTACACAAAAAGGAAAACCTTTGTAGCCAAGAAAATGAAGAACTTCATAAGAAGATAGACCTCATTGGTGAGGAAAATGCAAAACTAAACAAGCTTATTGGAGCAGCAAGACGTGCAGAATATGCAACATCCAATCCTTCATGCAGTAGTATCAGCTATGGATATTATGATAAACATGATGAACCAATCAGTCTTCAGCTAAGCCAGGCACAACCTCAATACAATGAACCTCCTGCCAGAGCAAATAATATGGGGTCTTGTCTCAAATTGAGGATGTGA 735 0.3143 MRRGKIVIERIENSSSRQVTFAKRKKGLMKKAEELSILCDAQVGLIVFSCTHKLYDYASSSMESTIERYSKLAEDRHHSMNPTTWDVQFWQSEASNLRKQLQHLKNWQRQVMGQELSGLEFNELQHLENQLEMSLKNIRMRKDQMFSDEIKELHKKENLCSQENEELHKKIDLIGEENAKLNKLIGAARRAEYATSNPSCSSISYGYYDKHDEPISLQLSQAQPQYNEPPARANNMGSCLKLRM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01435 244 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Car06g01435 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g01435 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Car06g01435 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Car06g01435 244 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g01435 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 243 - -
Car06g01435 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 243 - -
Car06g01435 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car06g01435 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01435 Car-Chr6 13935625 13942419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01435 1 242 MADS-box Gene Family AT2G14210 48.560 1.19e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car06g01435 K-box 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01435 K09264 - gmx:100808145 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01435 06 13935625 13942419 Car01g00183 01 1385428 1386027 PCT