Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01425 ATGACTTCTTCCTTCTTTCTCATCAATCTCGCTTTCAAATGCCTTCATCATTTCGCATGGCCTCTTCTAGCTCTGGGGTATCCTCTGTGTGCTTCCGTACAGGCAATCGAGACTGAATCATATGCACAAACTAAGGATTTGATCTCATATTGGATACTTCTTTCATTAATATACCTCTTTGAGTATGCTTTTATGACCCTTCTTCTATGGTTTCACCTCTGGCCGTACATTAAGCTAATGATCATCTTCTGGCTCATCATACCGGACTTTGGACGAGCTTCTTATGTTTATAATAACCTTATTCGCTCCATGAAACCGCAAATAGTCACATGGAGGTTAAATAATTTCTGGAGGAAGTGTTTTGTTGAGAAAGACGACTTCTTGCTGCATGCAGAGAGGTTTATGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGACAAATGGAGAAAGACTCCAAACAGACCACAAAGATATCAAAGATTCGGAGGCTATTGAGAAAAAAGAAATTACAGCAACCAAACATAATATTCCTGTGATGTCTAACGTTATGCCAACTCAAAACGCATCATCAGCCATAGCAGAAACCAAACGAATAGTGGGGAGGGACACAGCTGGTGGAGAGCTTCTTACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCCTTATGTTTGGTAACAACGACGAGTGCGAAGACCTTGAATTCCCACCTTAATGGGAAGAAACACAAAGCTACTATCGAAGCTTTGAAAGCAAATAAGCAACCTGCTCCACAGAAGATGAAAATCTGTCAGTCCAAAGAGGAGTGGAAACAGAAGAAAGTTAGCAACAAGATAAATTCCAATGGAAAGAATGGAGATGGCAATACTGTTAACATAGGATTGAAGGGAACAGTAGTGATGAATCATAAGGTGCAAAAACCGCAAAGCCTGCAGGAGGCTGTTACTGTTAGGTTGAATGATTCACAACTAATATGTGGAGTCTGTAAAGTTGTACTTCATAGTGAGGCCAACGCCATCTCTCACATAAATGGGAAGAAGCACTTGGCTAAAATGCAAAGTAGATAG 1080 0.4074 MTSSFFLINLAFKCLHHFAWPLLALGYPLCASVQAIETESYAQTKDLISYWILLSLIYLFEYAFMTLLLWFHLWPYIKLMIIFWLIIPDFGRASYVYNNLIRSMKPQIVTWRLNNFWRKCFVEKDDFLLHAERFMKENGTEALEKLIASKTNGERLQTDHKDIKDSEAIEKKEITATKHNIPVMSNVMPTQNASSAIAETKRIVGRDTAGGELLTQKEVQKEWTCALCLVTTTSAKTLNSHLNGKKHKATIEALKANKQPAPQKMKICQSKEEWKQKKVSNKINSNGKNGDGNTVNIGLKGTVVMNHKVQKPQSLQEAVTVRLNDSQLICGVCKVVLHSEANAISHINGKKHLAKMQSR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01425 359 Gene3D Classic Zinc Finger 306 359 - -
Car06g01425 359 Gene3D Classic Zinc Finger 207 253 - -
Car06g01425 359 Pfam Zinc-finger of C2H2 type 223 247 - -
Car06g01425 359 Pfam Zinc-finger of C2H2 type 329 352 - -
Car06g01425 359 SUPERFAMILY beta-beta-alpha zinc fingers 324 357 IPR036236 -
Car06g01425 359 SUPERFAMILY beta-beta-alpha zinc fingers 215 257 IPR036236 -
Car06g01425 359 SMART ZnF_U1_5 325 359 IPR003604 GO:0003676|GO:0008270
Car06g01425 359 SMART ZnF_U1_5 220 254 IPR003604 GO:0003676|GO:0008270
Car06g01425 359 PANTHER HVA22-LIKE PROTEINS 1 270 IPR004345 -
Car06g01425 359 PANTHER HVA22-LIKE PROTEINS 266 357 IPR004345 -
Car06g01425 359 Pfam TB2/DP1, HVA22 family 28 103 IPR004345 -
Car06g01425 359 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 270 - -
Car06g01425 359 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 266 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01425 Car-Chr6 13869516 13872156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01425 223 352 C2H2 Transcription Factor Family AT2G19380 25.385 4.63e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01425 - - gmx:100812073 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01425 06 13869516 13872156 Car06g01425 06 13869516 13872156 ECH