Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01420 ATGGATACGCTGAATTCGTGTGAAAACGAGTTAATGGTTGTTCCCATGCACTGTACCAATGGAGCTTCTGTTTCTGATGAAGGGGGAGAAGAATCTCAACCCATTGCTACTACTTCTCGTGCTAGTGAACTCACCATTTCATTTGAAGGCGAAGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGGTGCAGGCTGTATTGCTACTCTTGGGAAGGCAGGAGACACCTGATAGCACTCCCACCTCTAACTTTTTGGTGCAGCAAAACTGTCAAGATATTTGGGGAATAAATGATCCTTCTCGTAGTTCAAAGCTCTCGCGGAGAATTGCATCACTTGTTAGGTTCCGTGAAAAGCGAAAGGAGAGATGCTTTGAGAAGAAAATTCGGTACACTTGCCGTAAAGAGGTTGCTCAAAGGATGCATCGGAAGAATGGACAGTTTGCATCATTGAAAGAAGACTACATTTCGCCTGCTGAAAATCAGGATTCTAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAACATTGTGGAATTGGTGAGAAGTCTACTCCAGCAATGCGTCGAGGACCAGCTGGTCCGAGATCTCTGTGCAATGCCTGTGGTCTCATGTGGGCAAATAAGGGAACTTTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCTACTGATATAAAGCCTTCTACAACAGAACCAGGAAATTCTTGCACTGTGCAGGACAAGGAGGGAAGCCCCCAGGAAAATAAGCCTGTACCAATAGACGTCAAACAGTCACCTGAGACGGAAAATGAGCAGTATATTCTTGAATCTGCTGAAGCAGTTACCGACAACCTGTCCATCCAATTGGAGAATAATGTTCTTGATCTGCACGAGCAGGATAATACTATGGAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGATTCCTGCAGGTTTCGACGATCAGGTTGATATTGATGATTCTAATATGAGGACTTACTGGCTGTGA 1023 0.4438 MDTLNSCENELMVVPMHCTNGASVSDEGGEESQPIATTSRASELTISFEGEVYVFPSVTPQKVQAVLLLLGRQETPDSTPTSNFLVQQNCQDIWGINDPSRSSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYISPAENQDSSNGTPCPESTERRCQHCGIGEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSTDIKPSTTEPGNSCTVQDKEGSPQENKPVPIDVKQSPETENEQYILESAEAVTDNLSIQLENNVLDLHEQDNTMEDFADASGTEFEIPAGFDDQVDIDDSNMRTYWL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01420 340 MobiDBLite consensus disorder prediction 155 175 - -
Car06g01420 340 ProSiteProfiles GATA-type zinc finger domain profile. 171 228 IPR000679 GO:0006355|GO:0043565
Car06g01420 340 PANTHER GATA TRANSCRIPTION FACTOR 28 21 331 IPR045280 GO:0006355
Car06g01420 340 MobiDBLite consensus disorder prediction 156 172 - -
Car06g01420 340 ProSitePatterns GATA-type zinc finger domain. 177 204 IPR000679 GO:0006355|GO:0043565
Car06g01420 340 SMART GATA_3 171 224 IPR000679 GO:0006355|GO:0043565
Car06g01420 340 Pfam GATA zinc finger 177 213 IPR000679 GO:0006355|GO:0043565
Car06g01420 340 ProSiteProfiles Tify domain profile. 37 72 IPR010399 -
Car06g01420 340 Pfam tify domain 40 71 IPR010399 -
Car06g01420 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 225 - -
Car06g01420 340 MobiDBLite consensus disorder prediction 230 270 - -
Car06g01420 340 Pfam CCT motif 108 149 IPR010402 GO:0005515
Car06g01420 340 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 21 331 - -
Car06g01420 340 SMART tify_2 37 72 IPR010399 -
Car06g01420 340 MobiDBLite consensus disorder prediction 230 255 - -
Car06g01420 340 ProSiteProfiles CCT domain profile. 108 150 IPR010402 GO:0005515
Car06g01420 340 Gene3D - 170 229 IPR013088 GO:0006355|GO:0008270
Car06g01420 340 CDD ZnF_GATA 176 219 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01420 Car-Chr6 13811006 13815650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01420 14 220 Tify Gene Family AT1G51600 55.046 2.45e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car06g01420 CCT 5.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01420 - - gmx:100785549 509.605