Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01398 ATGGTGCTTCATCACAGAAAACTGTTATCTGACTTTGACTGTGGATTCATCGGTCAAGTAGAACAGCCTTGTTCCTCAAACTGTGATGATTGCCTCGACCCCAATAAATATAGCCCTCCATTACCACCAACTGTTGAAGTTAAAGTTGAGCACACCAAACACAACAAAACTCCCACTTACTTGATCATAAGTTTTTCAATTGTAGCAGCAATTTTCCTTGTTCTCTGCCTCTATGCCTTGTATATCAAGTTTTTCTCCAATAGGAACAGGTCAACAAGGAGAACCTTATTTACAAGACAACAAACAGAACATGGTTTTGTTGTTGATGAAGAACATGATGATGGTTCTGTTGTGGACCACCCCATATGGTATATTCGCACCCCTGGTCTTCAACAATCAATTATTAATGCAATCACTGTTATTAAGTATAAGAAAGGTGAAGGCTTGATTGATGGGTCAGATTGTTCTGTTTGTTTGAGTGAGTTTCAAGATGATGAGGATCTTAGACTTTTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGTTCACATACTAATTGTCCTATGTGTAGAGCTCCTATTGCTGTTGACCCTTTGGTTTTAAGGATTCCATCTTTGGAGCCTAATAATGTTTTTGGTTCAAATTCTGTGGAAAATTCTCAAATTGAAGTTTTTGAAAATAGTGATAGTGTTGTTGATCATTTGAGAAATGGAGAAGAGGAAGAAAGGGAAGAAGTGGTTGAGGAAGATGAGAGTTCAGGTTTGGAGATGGTAAACATGCAGCCAAGAAGATCAGTGTCTTTTGATTCTTCTTCTGCTGCTAAGATTAATCTTGCTCTTTCAAGTGTTGTTTTGCCAGTGGAATCTCATAAGAATTCAAATAGGGAACATGTGAAGATTCATAGTGCGCCTGATTCAATGAAAAGGTCAACATCATTCAATGGAAAACACCAGAAGAAATCAAATGATCCACTTAGAAGCTTTTGA 1005 0.3751 MVLHHRKLLSDFDCGFIGQVEQPCSSNCDDCLDPNKYSPPLPPTVEVKVEHTKHNKTPTYLIISFSIVAAIFLVLCLYALYIKFFSNRNRSTRRTLFTRQQTEHGFVVDEEHDDGSVVDHPIWYIRTPGLQQSIINAITVIKYKKGEGLIDGSDCSVCLSEFQDDEDLRLLPKCNHAFHLPCIDTWLSSHTNCPMCRAPIAVDPLVLRIPSLEPNNVFGSNSVENSQIEVFENSDSVVDHLRNGEEEEREEVVEEDESSGLEMVNMQPRRSVSFDSSSAAKINLALSSVVLPVESHKNSNREHVKIHSAPDSMKRSTSFNGKHQKKSNDPLRSF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01398 334 MobiDBLite consensus disorder prediction 296 310 - -
Car06g01398 334 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 318 IPR044675 -
Car06g01398 334 PANTHER RING-H2 FINGER PROTEIN ATL54 20 318 - -
Car06g01398 334 SUPERFAMILY RING/U-box 149 203 - -
Car06g01398 334 CDD RING-H2_PA-TM-RING 154 197 - -
Car06g01398 334 Pfam Ring finger domain 154 197 IPR001841 -
Car06g01398 334 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Car06g01398 334 MobiDBLite consensus disorder prediction 293 334 - -
Car06g01398 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 203 IPR013083 -
Car06g01398 334 SMART ring_2 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01398 Car-Chr6 13670314 13671804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01398 69 202 C3H Transcription Factor Family AT1G72220 55.970 2.48e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01398 - - mtr:MTR_4g093830 430.254