Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01390 ATGGAAAACGATGACGTTGATATGCTCGGAGCCGACAACAACGAAGCCGAATTGGATGACATGAAGAAGCGGTTAAAGGAAATGGAAGACGAAGCTGCTGCTTTGAGGGAGATGCAGGCCAAGGTCGAGAAAGAGATGGGATCTGTGCAAGATCCCGCTAATGCTGCTGCAAGTCAGATTAATAGGGAGGAAGTTGATTCTCGATCAGTCTTTGTGGGCAATGTGGACTATGCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTGAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTGGAATTTGTTGAAGTAGAAGCTGTTCAAGAGGCTCTGTTGCTGAATGAATCTGAACTACATGGACGTCAATTGAAGGTAACTGCTAAGAGGACCAACGTACCGGGGATGAAGCAATTTCGTCCCCGTCGGCCTAGTAATCCTTACATGGGGTTTCGAGGCAGAACTCCATATCCACCTCCTTTTGCCTTTGCTCCTGCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGGGGATGCGCTACAGCCCCTACTATTGA 600 0.4783 MENDDVDMLGADNNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANAAASQINREEVDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYPPPFAFAPAPYGYGKVPRFRMGMRYSPYY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01390 199 CDD RRM_II_PABPs 69 140 - -
Car06g01390 199 Coils Coil 11 45 - -
Car06g01390 199 PANTHER - 4 195 - -
Car06g01390 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Car06g01390 199 Gene3D - 6 141 IPR012677 -
Car06g01390 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Car06g01390 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Car06g01390 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 195 - -
Car06g01390 199 SUPERFAMILY RNA-binding domain, RBD 58 168 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01390 Car-Chr6 13590877 13596396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01390 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 2.83e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01390 K14396 - gmx:100784473 329.717