Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01377 ATGTCTCACTTCGGAAGGTCAGGTCCTCCAGACATCTCCGACACCTACTCTCTCCTCGTTCTCAACATCACATTCCGTACAACTGCCGACGACCTATTTCCTTTGTTTGATAAGTATGGCAAGGTTGTCGACATCTTCATCCCCAAAGATCGAAGGACCGGCGAGTCGAGGGGTTTTGCTTTTGTGCGTTACAAATATGCTGATGAGGCTTCGAAGGCTGTTGATAGACTTGACGGAAGGATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGCCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGCATCATGATGATTACAAAGACAAGGATTACAGGAGAAGAAGCCGCAGCAGGAGTTATGACAGGCATGAACGTGACAGGTACCGTGGGAGAGACAGGGATTATCGTCGCAGAAGCAGAAGCAGAAGCCGTAGTGCCAGTCCTGATTACAAGGGTCGTGGAAGAGGGCGTTATGATGATGAGCGTCGCAGTAGAAGCCGAAGCAGATCAGTGGACAGCCGCTCCCCTGCACGACGCAGTCCAAGTCCTAGAAAGAGCCCTTCTCCTAAGAGGAGTATTTCCCCTCAAAGGAGTACTTCCCCCAGGAAAAGTCCACTTGCTGGAAGTCCTGATAATCGTAGCCAGGATGGAAGGTCTCTTACCCCTCGCAGTGTCTCACCGCAAGGTCGCCCTAAAGCTTCCCGAAGCCCATCTCCCCGAAATTCAAATGGCGATGAATAA 813 0.5006 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHHDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDYRRRSRSRSRSASPDYKGRGRGRYDDERRSRSRSRSVDSRSPARRSPSPRKSPSPKRSISPQRSTSPRKSPLAGSPDNRSQDGRSLTPRSVSPQGRPKASRSPSPRNSNGDE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01377 270 Gene3D - 4 104 IPR012677 -
Car06g01377 270 MobiDBLite consensus disorder prediction 122 198 - -
Car06g01377 270 MobiDBLite consensus disorder prediction 100 270 - -
Car06g01377 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Car06g01377 270 SMART rrm1_1 17 90 IPR000504 GO:0003723
Car06g01377 270 MobiDBLite consensus disorder prediction 199 270 - -
Car06g01377 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Car06g01377 270 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 270 - -
Car06g01377 270 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 270 - -
Car06g01377 270 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01377 Car-Chr6 13450467 13454324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01377 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 3.07e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01377 K12891 - gmx:100778928 308.145