Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01359 ATGAGTCCAGGTTTTCAACCGTACGCTGAGAACATCGATACCGGTTCGCCGCTCGCTCGATACTTCTTCGCCGGATCTCCGATTTCCGGTAAATCCAGCGAGTCCTTCACTTCTCCGATTTTCGGCTCCAGCAAATACAGATCCGCAAGAATGCAACAGTACTGCGCCACCAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCGCTCTCGCCGCTTTCTTCAATTGAGAATATGGAGATTAAGCCACTTATGTCACCGCCGATGTACGGAACGCCTGTGAAGGTGGACGAGGAAGTTATTGTGATGGATGATATTCAAGTGAGGCCAATGTCCGGAGGAAAGAACGGAAGATCTTCGTCATCTTCCTCGAGCAGGGGCTCCGGCTCCTCGTCTTCCTCCTCGAAGAGCGTGTATAAGACGGACATTTGCAGAGCGTGGGAGGAATCTGGAAACTGCCGCTACAACTCCAAATGCCAGTTTGCCCACGGAAGAGAAGAGCTTCATCCAAGTCGTCTCATGAAGAGTAAATCTGAGGCCCAGACGAGCAAATTATCAATTAGACTAGGACAGGGCACATATGGCCCAAATAGCCGTGTTGTTCATGAACACCCTGCAGTAACTGAATCTGAATGTGCACTCACAGGACTCATAACTTCCCAACCAGCTTCACCTGAACCTTATCGTAGTACCCATGCCAATTCCAACATCATCAATGACTGGTCACCCCTGGATGATGGCATTGATGTTGTCCTCCCAAATGGTTCAGATAAGGTTCCCTCAAGGGAGGAAGTTGATGCCTACATTTTTGGCCTTCTCAATGAGCCGACTACTAAAAGGAGACTACCAGTATTCGTGGCAATTTGCGAGGGGCAGTAG 885 0.4949 MSPGFQPYAENIDTGSPLARYFFAGSPISGKSSESFTSPIFGSSKYRSARMQQYCATSSGNSSFGSRGRLSLSPLSSIENMEIKPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRSSSSSSSRGSGSSSSSSKSVYKTDICRAWEESGNCRYNSKCQFAHGREELHPSRLMKSKSEAQTSKLSIRLGQGTYGPNSRVVHEHPAVTESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPNGSDKVPSREEVDAYIFGLLNEPTTKRRLPVFVAICEGQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01359 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 167 IPR000571 GO:0046872
Car06g01359 294 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 11 290 - -
Car06g01359 294 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Car06g01359 294 MobiDBLite consensus disorder prediction 115 138 - -
Car06g01359 294 MobiDBLite consensus disorder prediction 109 138 - -
Car06g01359 294 SUPERFAMILY CCCH zinc finger 139 171 IPR036855 GO:0046872
Car06g01359 294 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Car06g01359 294 Gene3D - 132 173 - -
Car06g01359 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 11 290 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01359 Car-Chr6 13306012 13309211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01359 137 172 C3H Transcription Factor Family AT1G68200 47.222 9.78e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g01359 zf-CCCH 4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01359 K18753 - gmx:102665928 266.159