Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01352 ATGTCAGATGAGGATGAGTATCGTTGTTTTATTGGTGGCCTTGCGTGGTCAACATCTGATAGAAAGTTAAAGGATACTTTTGAAAAGTTTGGCAAGCTTACTGAAGCCAAGGTGGTTGTTGACAAGTTCTCTGGACGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAGGGCTCAACCTCAACAAGGATCAGGTAAGGATGATGGTGATCGCTACAGAGAACGTGGTCGTGATCGTGACAGAGATCATCGTGGTGGTCGGGGATCTAGTGATGGAGGATGCTTTAAGTGTGGAAAACCCGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGAGGGAAGAGGCGGAAGATATGGTGGCAGGGAAAGTAGATAtggtggaagcagtggcggcggcggtggcggtTACTATGGTCCAGATAGAAATGCAGATCGTTCTTCTGGCGGTCGCAGCAGGGATTCTGGTCATCGTGGAGATTCTGGAAGTGATCGATACAATCGTGATCGTGCTGGACCATATGAACGAGAACGACGGGGATCTGGAGGCTTTCGTTGA 627 0.437 MSDEDEYRCFIGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDRAQPQQGSGKDDGDRYRERGRDRDRDHRGGRGSSDGGCFKCGKPGHFARECPSEEGRGGRYGGRESRYGGSSGGGGGGYYGPDRNADRSSGGRSRDSGHRGDSGSDRYNRDRAGPYERERRGSGGFR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01352 208 MobiDBLite consensus disorder prediction 88 114 - -
Car06g01352 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Car06g01352 208 MobiDBLite consensus disorder prediction 169 208 - -
Car06g01352 208 SMART rrm1_1 8 81 IPR000504 GO:0003723
Car06g01352 208 Pfam Zinc knuckle 118 134 IPR001878 GO:0003676|GO:0008270
Car06g01352 208 MobiDBLite consensus disorder prediction 76 208 - -
Car06g01352 208 Gene3D - 116 178 - -
Car06g01352 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Car06g01352 208 MobiDBLite consensus disorder prediction 128 143 - -
Car06g01352 208 SUPERFAMILY Retrovirus zinc finger-like domains 112 137 IPR036875 GO:0003676|GO:0008270
Car06g01352 208 PANTHER TRANSFORMER-2-RELATED 1 165 - -
Car06g01352 208 Gene3D - 1 115 IPR012677 -
Car06g01352 208 SUPERFAMILY RNA-binding domain, RBD 3 116 IPR035979 GO:0003676
Car06g01352 208 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Car06g01352 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 165 - -
Car06g01352 208 ProSiteProfiles Zinc finger CCHC-type profile. 119 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01352 Car-Chr6 13229229 13233417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01352 10 84 Eukaryotic Initiation Factors Gene Family AT1G34140 34.667 6.01e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01352 - - gmx:100815224 263.077