Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g01352 | ATGTCAGATGAGGATGAGTATCGTTGTTTTATTGGTGGCCTTGCGTGGTCAACATCTGATAGAAAGTTAAAGGATACTTTTGAAAAGTTTGGCAAGCTTACTGAAGCCAAGGTGGTTGTTGACAAGTTCTCTGGACGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAGGGCTCAACCTCAACAAGGATCAGGTAAGGATGATGGTGATCGCTACAGAGAACGTGGTCGTGATCGTGACAGAGATCATCGTGGTGGTCGGGGATCTAGTGATGGAGGATGCTTTAAGTGTGGAAAACCCGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGAGGGAAGAGGCGGAAGATATGGTGGCAGGGAAAGTAGATAtggtggaagcagtggcggcggcggtggcggtTACTATGGTCCAGATAGAAATGCAGATCGTTCTTCTGGCGGTCGCAGCAGGGATTCTGGTCATCGTGGAGATTCTGGAAGTGATCGATACAATCGTGATCGTGCTGGACCATATGAACGAGAACGACGGGGATCTGGAGGCTTTCGTTGA | 627 | 0.437 | MSDEDEYRCFIGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDRAQPQQGSGKDDGDRYRERGRDRDRDHRGGRGSSDGGCFKCGKPGHFARECPSEEGRGGRYGGRESRYGGSSGGGGGGYYGPDRNADRSSGGRSRDSGHRGDSGSDRYNRDRAGPYERERRGSGGFR | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g01352 | 208 | MobiDBLite | consensus disorder prediction | 88 | 114 | - | - | |
Car06g01352 | 208 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Car06g01352 | 208 | MobiDBLite | consensus disorder prediction | 169 | 208 | - | - | |
Car06g01352 | 208 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Car06g01352 | 208 | Pfam | Zinc knuckle | 118 | 134 | IPR001878 | GO:0003676|GO:0008270 | |
Car06g01352 | 208 | MobiDBLite | consensus disorder prediction | 76 | 208 | - | - | |
Car06g01352 | 208 | Gene3D | - | 116 | 178 | - | - | |
Car06g01352 | 208 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
Car06g01352 | 208 | MobiDBLite | consensus disorder prediction | 128 | 143 | - | - | |
Car06g01352 | 208 | SUPERFAMILY | Retrovirus zinc finger-like domains | 112 | 137 | IPR036875 | GO:0003676|GO:0008270 | |
Car06g01352 | 208 | PANTHER | TRANSFORMER-2-RELATED | 1 | 165 | - | - | |
Car06g01352 | 208 | Gene3D | - | 1 | 115 | IPR012677 | - | |
Car06g01352 | 208 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 116 | IPR035979 | GO:0003676 | |
Car06g01352 | 208 | SMART | c2hcfinal6 | 118 | 134 | IPR001878 | GO:0003676|GO:0008270 | |
Car06g01352 | 208 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 1 | 165 | - | - | |
Car06g01352 | 208 | ProSiteProfiles | Zinc finger CCHC-type profile. | 119 | 134 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car06g01352 | Car-Chr6 | 13229229 | 13233417 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car06g01352 | 10 | 84 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 34.667 | 6.01e-06 | 44.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g01352 | - | - | gmx:100815224 | 263.077 |