Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01336 ATGTCAACTTTGTATGGTACTCTGAGGATCAGAAGAAACATACTCCAACTTGCTCCTCGTATACGTGCCTTTTCTTCTCAAACCAAAACCAACGACACAATAAAACAGTTACTTTACCAATGCAACAAAAAGATTTCCCATTTGATTCGAACTGGTAGATTAACCGAAGCGAGGTCATTCTTCGATTCCATTACTAACCGAAACACAGTTACATGGAATTCCATGATCACTGGTTATGTTCAACGGAGAGAGATTTCAAAAGCACGCCAACTGTTTGATGAAATGCCCGACAAGGATATTGTGTCTTGGAACCTCATCATTTCGGGTTACTTTTCCTGCCGTGGAAGCAGGTTTGTAGAAGAAGGTAGAAAGCTGTTTGATCAAATGCCCCAAAGGGATTGTGTCTCTTGGAACACTGTCATCAGCGGCTACGCCAAGAATGGAAGGATGGATCAAGCTCTTGAGATTTTTAATTCTATGCCGCAACGGAATGTTGTGTCATCCAATGCTTTGATAAATGGGTTCTTGTTGAATGGTGACGTGGATTCTGCTGTTGGATTTTTTAGGACTATGCCAGAGAGGGATTCGGCTTCGCTTAGTGGTCTTATATCTGGACTTGTTAGGAATGGGTATGGTCAGAAAGGTATGGTTGAAGAGGCGCGGTGCCTTTTTGACGGGGTCATGAGTGATGGAAATGAGGGTCGAGGGAGATTTAGGAGAAATGTCGTATCATGGAATTCGATGATGATGTGTTATGTGAAAGCAGGAGATGTTGTCTCTGCCAGGGAACTCTTTGATAGGATGATGGAGCGGGATGTTTGTTCCTGGAACACCATGATCAGTGGCTATGTTCAAATATGTAATATGGAAGAGGCTTCAAAGCTTTTCTCAGAAATGACGAGTCCTGATGAACTTTCATGGAATTCAATAATATCTGGGTTTGCGCAGATTGGTGATTTGAAACGTGCTAAAGAGTTCTTTGAGAGGATGCCCCGCAGAAACCTGATCTCGTGGAACTCGCTAATAGCTGGCTACGAGAAAAACGAAGACCATAAGGGTGCTATTGAGCTATTTTCTCGGATGCAGCTTGAGGGTGAGAGGCCAGATAAACACACTTTGTCTTCAGTTCTCAGTGTGTGTACTGGATTGGTGGATCTTTACCTTGGTAAGCAGATACATCAGCTTGTCACTAAGACTGTTATTCCTGATTTGCCGATAAATAATTCTCTCATTACCATGTACTCGAGATGTGGGGCAATTGGTGATGCACGCGCAGTGTTTAATGAGATGAAACTTTGTAAAGATGTGATAACTTGGAATGCAATGATTGGAGGTTATGCATTTCATGGCTTTGCTGCAGTGGCTCTCGAGCTTTTTGAACGGATGAAGAGGCTTAAAATTAAACCTACCTATATAACCTTTATTTCGGTTTTGAACGCGTGTGCTCATGCAGGATTAGTTGAAGAAGGGAGGAGGCAATTCAATTCCATGATTAATGACTATGGCATTGAACCTCGGGTTGAACACTTTGCCTCCCTTGTGGACATCCTGGGACGGCAGGGTCAACTTCAAGAGGCTATGAATTTGATCAATAGCATGCCAGCTAAACCCGATAAGGCTGTCTGGGGTGCACTACTAGGGGGTTGTAGAGTGCATAATAATGTAGAATTGGCCCAAGTAGCTGCCAAAGCTTTGATCGGTCTTGAACCAGAAAGTTCAGCTCCTTATGTGTTGTTATATAATATGTATGCTGATTTAGGACAATGGGATGATGCCGATAGACTGCAAGGAACTCCAACCTTGAATGGCTGCAAGATTGTGAAGTCTTTTCCAAAAGACGATCCTACTAAACCATTCAGACTGACTGCTTTTGTGGGCTACAAGGCTGGGATGATCCACATAGTGAGAGAGGTTGAGAATCAAAGAAGAAGGCTTTCACTAAGTATTCAAAAAAAATATGAAACTGAGGGAGGAAAGAAAGATATCGGATCCCAGCTCGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCCGATAAGGAAGTTGAACGGGCTAAAACAAAAGGAAGCTCGTTTGATGGAGATCCAAGGTAATGGTGGAACTATAAGCCAAAACGTGGACTATGCATACAGTTTCTTTGAGAAGCAAATCTCAGTGGATGCTATTTTCCAGAAAGATGTGATGATAGATATAATTGGAGTGACTAAAGGTAAAGGTTATGAAGGTGTTTTCACTCGTTGGGGTGTCATTTGCCTTCCAAGAAAGACACACAAAGGTCTCAGGAAGGTTGCTTGTATTGGTGCGTGGCACCTTGCTCGTGTTTCTTTCACAGTTGCTAGGGCTGGTCAGAATGGATACCATCATCGCACTGAGTTGAATAAAAAGATCTACAAGGTTTGCAAGTCGGACCAAGAGTTGCATACAGCCATCATTGAATATGACAGTACGGAGAAAGATATTACTCCTATGGGTGGTTTCCCTCATTGTGGTGTGGTGAAGCGTGATTATCTTATGATTAAGGGAGGCTGTGTTGGACCAAAGAAACGGGCTGTTACTCTTCGTCAGTCACTACTCAAGCAGACATCTTGA 2604 0.4278 MSTLYGTLRIRRNILQLAPRIRAFSSQTKTNDTIKQLLYQCNKKISHLIRTGRLTEARSFFDSITNRNTVTWNSMITGYVQRREISKARQLFDEMPDKDIVSWNLIISGYFSCRGSRFVEEGRKLFDQMPQRDCVSWNTVISGYAKNGRMDQALEIFNSMPQRNVVSSNALINGFLLNGDVDSAVGFFRTMPERDSASLSGLISGLVRNGYGQKGMVEEARCLFDGVMSDGNEGRGRFRRNVVSWNSMMMCYVKAGDVVSARELFDRMMERDVCSWNTMISGYVQICNMEEASKLFSEMTSPDELSWNSIISGFAQIGDLKRAKEFFERMPRRNLISWNSLIAGYEKNEDHKGAIELFSRMQLEGERPDKHTLSSVLSVCTGLVDLYLGKQIHQLVTKTVIPDLPINNSLITMYSRCGAIGDARAVFNEMKLCKDVITWNAMIGGYAFHGFAAVALELFERMKRLKIKPTYITFISVLNACAHAGLVEEGRRQFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMNLINSMPAKPDKAVWGALLGGCRVHNNVELAQVAAKALIGLEPESSAPYVLLYNMYADLGQWDDADRLQGTPTLNGCKIVKSFPKDDPTKPFRLTAFVGYKAGMIHIVREVENQRRRLSLSIQKKYETEGGKKDIGSQLEKLKKYATVIRVLAHTPIRKLNGLKQKEARLMEIQGNGGTISQNVDYAYSFFEKQISVDAIFQKDVMIDIIGVTKGKGYEGVFTRWGVICLPRKTHKGLRKVACIGAWHLARVSFTVARAGQNGYHHRTELNKKIYKVCKSDQELHTAIIEYDSTEKDITPMGGFPHCGVVKRDYLMIKGGCVGPKKRAVTLRQSLLKQTS 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 243 274 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 306 334 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 135 166 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Car06g01336 867 TIGRFAM PPR: pentatricopeptide repeat domain 275 300 IPR002885 -
Car06g01336 867 ProSitePatterns Ribosomal protein L3 signature. 728 751 IPR019926 -
Car06g01336 867 Pfam PPR repeat 301 330 IPR002885 -
Car06g01336 867 SUPERFAMILY Translation proteins 605 867 IPR009000 -
Car06g01336 867 Gene3D Translation factors 724 867 - -
Car06g01336 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Car06g01336 867 PANTHER OS07G0578800 PROTEIN-RELATED 37 218 IPR045215 GO:0003723|GO:0009451
Car06g01336 867 PANTHER OS07G0578800 PROTEIN-RELATED 228 596 IPR045215 GO:0003723|GO:0009451
Car06g01336 867 Gene3D - 648 723 - -
Car06g01336 867 Gene3D Tetratricopeptide repeat domain 133 198 IPR011990 GO:0005515
Car06g01336 867 PANTHER OS06G0228900 PROTEIN 228 596 - -
Car06g01336 867 Pfam PPR repeat 408 431 IPR002885 -
Car06g01336 867 Pfam PPR repeat 512 534 IPR002885 -
Car06g01336 867 Pfam PPR repeat 243 272 IPR002885 -
Car06g01336 867 Pfam PPR repeat 275 300 IPR002885 -
Car06g01336 867 Pfam PPR repeat 209 231 IPR002885 -
Car06g01336 867 Pfam PPR repeat 101 134 IPR002885 -
Car06g01336 867 Pfam PPR repeat 166 194 IPR002885 -
Car06g01336 867 Pfam PPR repeat 135 165 IPR002885 -
Car06g01336 867 Gene3D Ribosomal protein L3, domain 3 742 790 IPR044892 -
Car06g01336 867 Gene3D Ribosomal protein L3, domain 3 607 621 IPR044892 -
Car06g01336 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Car06g01336 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Car06g01336 867 SUPERFAMILY HCP-like 144 360 - -
Car06g01336 867 Gene3D Tetratricopeptide repeat domain 207 302 IPR011990 GO:0005515
Car06g01336 867 Gene3D Tetratricopeptide repeat domain 20 132 IPR011990 GO:0005515
Car06g01336 867 Pfam Ribosomal protein L3 607 640 IPR000597 GO:0003735|GO:0005840|GO:0006412
Car06g01336 867 Pfam Ribosomal protein L3 650 867 IPR000597 GO:0003735|GO:0005840|GO:0006412
Car06g01336 867 Gene3D Translation factors 622 644 - -
Car06g01336 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Car06g01336 867 PANTHER OS06G0228900 PROTEIN 37 218 - -
Car06g01336 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Car06g01336 867 Pfam E motif 552 596 IPR046848 -
Car06g01336 867 Gene3D Tetratricopeptide repeat domain 407 602 IPR011990 GO:0005515
Car06g01336 867 Gene3D Tetratricopeptide repeat domain 303 400 IPR011990 GO:0005515
Car06g01336 867 Pfam PPR repeat family 67 99 IPR002885 -
Car06g01336 867 Pfam PPR repeat family 334 380 IPR002885 -
Car06g01336 867 Pfam PPR repeat family 434 482 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01336 Car-Chr6 13087259 13091994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01336 651 867 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 78.802 3.07e-117 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01336 - - mtr:MTR_4g094402 1014.99