Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01335 ATGTCAGTAACACAATTTCAGCTAGAGGCTGTTTGTCCAACAAACCCTCAAATCATTTCGTCTCCATCTGCTTCTTTCGGCGCCGTGTTGAAGAAGCGAGCTTCTCGTCATCGCGGAAAAGTGAAGTCTTTTCCAAAAGATGATCCTACTAAACCATGTAGGTTGACTGCTTTTGTGGGCTACAAGGCTGGGATGACCCACATAGTGAGGGAAGTTGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCCGTCACCATCATTGAAACTCCTCCAATTGTTGTTGTTGGAGTGGTGGGATATGTGAAGACACCACAAGGCCTTCGCACACTGAATACTGTTTGGGCTCAACATCTTAGTGAAGATGTTAAAAGGCGATTTTACAAGAACTGGTGCAAATCAAAGAAGAAGGCTTTCGCCAAGTATTCAAAAAAATATGAAACTGAAGGAGGAAAGAAAGATATCGAATCCCAGCTTGAGAAAATGAAAAAATATGCCACCGTTATTCGTGTTCTTGCTCATACTCAGATAAGGAAATTGAATGGTCTAAAACAAAAGAAAGCTCATTTGATTGAGATCCAAGTTAATGGTGGAACTATAAACCAAAAAGTGGACTATGCATATAGTTTCTTTGAGAAGCAAATTCCAGTGGATGCTGTTTTCCAGAAAGATGAGATGATAGATATCATTGGAGTTACTAAAGGTAAAGGTTATGAAGGTGTTGTGACTCGTTGGGGCGTCACTCGTCTTCCACGAAAGACACATAGAGGTCTCAGGAAGGTTGCTTGTATAGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACGGTCGCCAGGGCTGGTCAGAATGGATATCATCATCGTACTGAGTTGAATAAAAAGGTCTACAAGGTTGGCAAGTCTGACCAAGAGTCACATACAGCCATAACTGAATATGACAGGACGGAGAAGGATATTACTCCTATGGGTGGTTTCCCTCATTATGGTGTGGTGAAGCATGATTATCTTATGATCAAGGGAGGCTGTGTTGGACCAAAAAAGCGGGTTGTTACTCTTCGTCAGTCGCTGCTCAAGCAGACATCTCGATCAGCTCTTGAAGATATCAAACTGAAGTTCATCGACACCTCTTCCAAGTTTGGACATGGCCGCTTCCAGACTACTCAGGAGAAGCAGAAGTTTTATGGTCGGTTGAAGGCGTAA 1206 0.4295 MSVTQFQLEAVCPTNPQIISSPSASFGAVLKKRASRHRGKVKSFPKDDPTKPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPIVVVGVVGYVKTPQGLRTLNTVWAQHLSEDVKRRFYKNWCKSKKKAFAKYSKKYETEGGKKDIESQLEKMKKYATVIRVLAHTQIRKLNGLKQKKAHLIEIQVNGGTINQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKVGKSDQESHTAITEYDRTEKDITPMGGFPHYGVVKHDYLMIKGGCVGPKKRVVTLRQSLLKQTSRSALEDIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01335 401 Pfam Ribosomal protein L3 24 382 IPR000597 GO:0003735|GO:0005840|GO:0006412
Car06g01335 401 ProSitePatterns Ribosomal protein L3 signature. 224 247 IPR019926 -
Car06g01335 401 Gene3D Ribosomal protein L3, domain 3 25 286 IPR044892 -
Car06g01335 401 SUPERFAMILY Translation proteins 25 382 IPR009000 -
Car06g01335 401 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 23 401 IPR045077 GO:0003735|GO:0005840|GO:0006412
Car06g01335 401 PANTHER 60S RIBOSOMAL PROTEIN L3-1 23 401 - -
Car06g01335 401 Gene3D - 95 219 - -
Car06g01335 401 Gene3D Translation factors 56 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01335 Car-Chr6 13080332 13083934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01335 24 398 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 84.800 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01335 K02925 - gmx:100792174 668.307