Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01317 ATGGCTACCATTTCATCAACATGCTTCCTCTTTCTTCCCATAATAATAATAATAATAACTTTATCTTCATCATCATTATTTCCCACAACATTATGTGCAACAGTTCTACAAGACCTCAAAAACTTACACCCACCACCAGATTTCAACACTACAATCATCAACAACTGTCTCAAAAACCCATCTTTAAGGTACTGCACTTCCTCTCCAACCATCAACCTTGATGAAATATTCAAATACTCTATTGTTGCTAGCCATCTTTGCAATGAATCCAACAACCCCAATTGTGTTGAATCATTCCCAAAAATTGATCTTAGAAACCGACCAAACATTGCTTCACTTTATTTGTCTTTTACTTTCTTTTGGAAATATTGTCCCTTGAGTGTTCTATCCATTGATTTCTCTAATAATTCTATAAAGGGTAGTTTTCCAAATGATGTTCTTTATTGCACACAAATTCAGTCTCTTGATTTAAGTATCAATGAGTTTTCTGGTGACATTCCAATTCAAAGTTTCTCTCCACTCACTAACCTCACTTTTCTTAACCTCTCTTATAACTGTTTTTCTGAGAGTGAACTTTCTGAGTCACAATTCTTCAAAAAGTTTAATTCTTCTAGTTTTCTTCATTCTGGTGCTCTCTTTGATCACAAAAGGTTTACTATAAAAGCTATAATTTTATTGGTTGGTTTTCCAGTTTTTGTAATTTTGATGGTAATTTTCTTGGGATGGGTTTGTTTTCAAAGGCCTGATTTTCTTCCAACAATGTTTCAAAGAAGTATGAAGTTTACACCAGCAATTCTAAAAGCAGCAACTTTTGGTTATTCAAATGAGAATTTGGTTGGTAAGAGTGATATTATTCATATCTATAAAGGTGTCTTAAGAGATGGAACTAAAGTGAAAATTGAGATGTATTTGAATGAAATATCAAGGGATAGTTATCATAAATTTGTTGAGGAATGTATCATTTTGTGTGAGTTACAACACAAGAACCTTGTTAAGGTTTTAGGGTGGTGTAAAGGTAGAAAATTCAGGGCTATTATAACAGAATGGACAAAGGAAGAGAATGTTGAAATGTGGTTGTTAGAGTTAGCTCCATCATGGAATCATAGAGTGAAAGTTTTGATGGGAGTTGTTGATTGCATGTTGTATTTGCAAGAGGAATGGCCTGAAGTTGATTATGATCTCAAGACTAATAGTATTTTATTATCTGATAAGAAAGAACCATTAATTTCAAGGTTTCAAGTTGGAGATAAAAACAACAATAGTAGAAAGATATGTAACTTTGGAGTATTTGTGCTAGAGATGATACTAAACAAAAAGGTTCAAGAGGAGTTTGATGGAAGTGATACTGAATATATTAGCTACATAAGAACCCTTCATCATGCAGAATTGCATCAGATGATTGATGAGAGAATGAATGTCACTGAAACAACTTTGCATCAAATTAAACAAGTTCTATCCTTGGGATTAATGTGCATAGATCAATCAAGCAGTGAGCAACCAAGCTTGGACCAGATATTTAATATTGTATCAAGGGCTTACAAGGCTAGCCTTGTTTTGCCATCTGCAAATCATAAAATACTTCATGGAGATAGAGTTAAGGGACATAAACGTGTTCAGTTCAAATAA 1626 0.3327 MATISSTCFLFLPIIIIIITLSSSSLFPTTLCATVLQDLKNLHPPPDFNTTIINNCLKNPSLRYCTSSPTINLDEIFKYSIVASHLCNESNNPNCVESFPKIDLRNRPNIASLYLSFTFFWKYCPLSVLSIDFSNNSIKGSFPNDVLYCTQIQSLDLSINEFSGDIPIQSFSPLTNLTFLNLSYNCFSESELSESQFFKKFNSSSFLHSGALFDHKRFTIKAIILLVGFPVFVILMVIFLGWVCFQRPDFLPTMFQRSMKFTPAILKAATFGYSNENLVGKSDIIHIYKGVLRDGTKVKIEMYLNEISRDSYHKFVEECIILCELQHKNLVKVLGWCKGRKFRAIITEWTKEENVEMWLLELAPSWNHRVKVLMGVVDCMLYLQEEWPEVDYDLKTNSILLSDKKEPLISRFQVGDKNNNSRKICNFGVFVLEMILNKKVQEEFDGSDTEYISYIRTLHHAELHQMIDERMNVTETTLHQIKQVLSLGLMCIDQSSSEQPSLDQIFNIVSRAYKASLVLPSANHKILHGDRVKGHKRVQFK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01317 541 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 540 - -
Car06g01317 541 Pfam Protein tyrosine and serine/threonine kinase 279 430 IPR001245 GO:0004672|GO:0006468
Car06g01317 541 Gene3D Ribonuclease Inhibitor 52 216 IPR032675 -
Car06g01317 541 Gene3D Phosphorylase Kinase; domain 1 248 349 - -
Car06g01317 541 Gene3D Transferase(Phosphotransferase) domain 1 417 511 - -
Car06g01317 541 SUPERFAMILY Protein kinase-like (PK-like) 250 510 IPR011009 -
Car06g01317 541 SUPERFAMILY L domain-like 89 201 - -
Car06g01317 541 ProSiteProfiles Protein kinase domain profile. 273 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01317 541 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 15 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01317 Car-Chr6 12953744 12955685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01317 202 529 Receptor kinase-like Gene Family AT1G15530 24.054 5.36e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car06g01317 PK_Tyr_Ser-Thr 2.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01317 - - gmx:100779045 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01317 06 12953744 12955685 Car06g01317 06 12953744 12955685 ECH