Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01297 ATGGAAAAGGAGCCACTGCTCCCATATTTCAGCCCCAGAAAGAAGCTTTCGCCATTACCATCTCATCTTTTTCCATTACCAGAAAATGACGAAATGGTTCTTCCTGTTACCCCTTCTGAGTTCAAAGATCGTCTCATCTTTGGTCCTTCTTGTGTTTCACCTATTGACCCTTCACCTTTGGCTGATGCTTTAACACTTTCACGTAATTCACCAAGATGttcttcctcctcttcttcttcttctGTACCACATGATTTTGATGCATCGCAACATTCTCAACAACAACAACTATCTTCTTGGCTCATTGATCCTAATTACCGATGGAGAAAAACAAATCTTCATCGCTCCAAAACTGCACCTGCTATGGCTGTAATAAGCGATTTCAATCATCAATCATCTGTGAAAAGACCTCAATTTGGTAGCCAATCTATTATTCATCAAGCTGTTATTCTTCTTGTTCTTTATTTGGCTTTAGGTGTTGTTATTTATTGGTTCAATCGTCATGATTTTACAGCAATTGAAACTCATCCTATTGTGGATGCATTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGATATTACTCCAAATAGTACTGCAACCAAAATTTTCTCTATATTGTTTGTTTTGGTTGGTTTTGGTTTTATTGATATATTGCTTAGTGGGATGGTTAGTTATGTTCTTGATTTACAAGAGAATCATTTGTTGAGGGTAGTGAAAGGAAGAGGGGAGAAAGATGGTAGGTCATATATAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCATTGGCATTAGGGGTTGTGGTACTTTGTATTGGAGTTGGTGTTGGGGTTATGCATTTTGTTGAAAGGCTTGGATGGGTAGATTCTTTTTATCTTTCGGTTATGTCTGTTACAACTGTAGGATATGGCGATCATGCTTTTAAGACCTTGCACGGTCGTATCTTCGCTGCAATTTGGTTGCTTGTTTCGACGCTTGCGGTGGCCCGAGCATTCCTTTATTTGGCTGAGGCGAGAGTGGATAAGCGGCATAGGAGGATGGCGAAGTGGATTCTTGGTCAGGATATGACTGTTGCTGAGTTTCTTGCTGCTGACATAGACAATAATGGATTTGTGAGtaaatcagaatatgttatatacaagctcaaggagatgggaaaagtttcagaaaaggacatcatgcagatcagcgagaagtttgatcgactagatactggcaactgtggaaaaataacactcgctgatctCATGGAGAGTCATAATTGA 1287 0.3497 MEKEPLLPYFSPRKKLSPLPSHLFPLPENDEMVLPVTPSEFKDRLIFGPSCVSPIDPSPLADALTLSRNSPRCSSSSSSSSVPHDFDASQHSQQQQLSSWLIDPNYRWRKTNLHRSKTAPAMAVISDFNHQSSVKRPQFGSQSIIHQAVILLVLYLALGVVIYWFNRHDFTAIETHPIVDALYFCIVTMCTIGYGDITPNSTATKIFSILFVLVGFGFIDILLSGMVSYVLDLQENHLLRVVKGRGEKDGRSYIVDVKKGRMRIRMKVALALGVVVLCIGVGVGVMHFVERLGWVDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQISEKFDRLDTGNCGKITLADLMESHN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01297 428 Gene3D - 126 248 - -
Car06g01297 428 SUPERFAMILY Voltage-gated potassium channels 259 365 - -
Car06g01297 428 PRINTS Two pore domain K+ channel signature 187 215 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car06g01297 428 PRINTS Two pore domain K+ channel signature 306 315 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car06g01297 428 SUPERFAMILY EF-hand 363 425 IPR011992 -
Car06g01297 428 Gene3D - 273 334 - -
Car06g01297 428 Pfam Ion channel 274 343 IPR013099 -
Car06g01297 428 Pfam Ion channel 150 230 IPR013099 -
Car06g01297 428 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Car06g01297 428 PANTHER TWO-PORE POTASSIUM CHANNEL 3 92 423 - -
Car06g01297 428 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 92 423 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car06g01297 428 SUPERFAMILY Voltage-gated potassium channels 141 230 - -
Car06g01297 428 Gene3D - 335 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01297 Car-Chr6 12795342 12799517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01297 4 425 Ion Channels AT4G18160 62.587 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01297 K05389 - gmx:100804249 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01297 06 12795342 12799517 Car06g01297 06 12795342 12799517 ECH