Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01287 ATGTTATCTCTAAATCTAAACTTTTGGTTGACTATAGTCATAGTCATTTCAATTGTTACAAATGCTGAAAAAACAACCTTTGAAATTGAAATTGAAGCACTGAATGCTTTCAAAAATTCCATAACAAATGACCCAAATGGAATATTTTCTGATTGGGTTGAAACTCACCCTCATTGTAACTGGACTGGAATTTCATGTGACAAATCTTCAAAACATGTCACATCAATTTCTCTTGTTGCTCTTCAAATCCAAGGTGAGATTTCACCATTCCTTGGAAACATTTCAAACCTTCAAGTTCTTGATTTAACTACAAACTCATTTTTTGGTCATGTACCTCCTCAGATTAGTCTTTGCACTCAACTCACACAACTTTTACTTGTTGAGAATTCTTTATCAGGTTCAATCCCTCATGAATTAGGAAACCTACAAAATTTGCAGTATTTGGATTTAGGTAGTAACTCTTTTAATGGAACACTTCCTAGTAGCATATTCAACATCACTTCTTTGTTAGGTATTGCTTTCAATTTCAACAAACTTAGTGGAAAAATTCCATCAAACATAGGGAATCTAATTAACACTATACAAATTGTAGGGTTTGGGAATAGTTTTGTTGGTTCTTTACCTGTTTCTATAGGAAATTTAGTTCAATTGGAAACATTGAGGTTATATGGAAATAATTTGAATTCAACTATACCATCTTCCATATTTAAGTTGAAATCATTAACACATTTAGGGTTATCAGATAATAACTTAGAGGGAACAATATCTTCTGAGGTTGGATCTTTGAAATCTTTAAAAGCATTAACCTTGCATTTAAATAAGTTTACCGGAACAATTCCTTCGTCGATAACAAATTTGATAAACTTGACAACTTTGTCCATGAGTCAGAATCTACTTTCAGGTGAAATTCCTTCAAACTTAGGTGTGCTTCATAATTTGAAGTTTCTTGTGTTGAACAACAATTTTTTACATGGACCTGTTCCTCCTAGTATTACCAATTGTACTAGTTTGGTAAATGTGAGTTTGTCTTTTAATTCTTTAACTGGGAAGATTCCTGAGGGTTTTTCAAGGCTGCCTAATTTTACTTTTCTGTCCCTTGCATCTAACAAAATGAGTGGTGAAATCCCTGATGACCTCTTCAACTGCTCAAATCTCAGTACTCTAAGTTTGGGGGATAATAACTTCAGTGGATTGGTAAAATCTGGTATCAAGAATCTGTTGAATCTCATGCGTTTGCAGCTGAATGCGAACGCATTTGTAGGGCCGATTCCACCAGAGATTGGAAACTTGAATAAACTCATCACTTTGTCCCTTTCTGAAAATAGATTTTCAGGTCATATTCCGGTAGAATTGTCCAAACTTTCTCTCCTTCAGGGACTCTCTCTACATGACAATGTATTAGAAGGTACAATACCTGATAAACTTTTGGAACTAAAACAACTGACTTTACTTTTGCTGCAAGAAAACAAGTTGGTTGGCCAAATACCAGATTCACTCTCAAATCTTGAGATGCTTTCGTACTTGGATCTTCATGGAAACAAACTTAATGGATCCATTCCAACAAGCATGGGGAAGCTCAACCGTCTTTTAATGTTGGATCTCTCTCACAACCACCTCACAGGATCGATTCCAGGAGATGTCGTTGCACGCTTCAAAGATATGCAAATGTATCTTAACCTTTCTTACAACCATTTTGTTGGAAGTGTTCCAGCTGAGCTGGGGATGTTGGAAATGGCACAAGCCATTGATGTTTCAAACAATAATCTGTCAGTTTTTAGCGGCATGGACTTGCTTCAAAGCTTAAATCTTTCAAGAAATCATTTAGAAGGTGAAATCCCTACAAGCTTGTCACAGCTTAAAAATCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAATCTTTCCAACCTGATGCAGTTCAACTTTTCTTTCAATCAACTTGAAGGTACTGTACCTTTGACTGGAATATTTGCCCATATGAATGCATCTAGTATGATTGGAAACCAAGCTCTTTGTGGAACGAAATTCCTAAAACCGTGCAGAGACAATGATCATTCTCTATCCAAGAAAGCCATAGTTATCATTGCTTCACTTGGATCTCTTGCTATCCTTCTACTTGTAGTGCTTCTGATTTTATTCTTCAAGCGAGGCACCAAATTTGGCAAATCTATAAAGAGAAAGGATACTGAGAATCATGAACCAGATTACGATGCAGCATTGGCTCTTAAAAGATTCAGTCCAAAGGAGTTAGAAAATGCCACCGGTTGTTTCAGCTCGGACTACATCATTGGTGCTAGCAGTTTGAGCACCGTTTACAAGGGCCAATTCGAAGACGGTCAGATTGTAGCCATAAAAAGATTGAATTTGCACCAGTTCTCTGCAAATACTGACAAGATCTTCAAGAGAGAAGCCGGAACCTTGAGTCAGCTGAGACATAGGAATTTGGTTAAGATACTTGGATATGCCTGGGAAAGTGGGAAAACAAAGGCTTTAGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGACAAAGAGGGAGATCAGTCTAGGTGGACATTATCCGAAAGACTCGGGGTTTTCGTTTCTATTGCCAGTGGATTGGATTACTTGCACTCTGGTTATGATTTTCCCATTGTTCACTGTGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTGGGAAGCTCATGTCAGCGATTTTGGGACGGCTCGAATACTTGGTCTTCATCTGCAGGATGGTAGTGCCCTTTCCACATCAACAGCTTTGCAAGGCACAATTGGCTATTTTGCACCAGAAACTGCCTACCTAAGGAAAGTAACAACTAAAGTGGATGTGTTCAGCTTCGGTATCATAGTGATGGAATTTCTAACAAAAATAAGACCAACAGGGCTCGCAGAAGAGGTCGGCTTGCCAACCAGTTTGCGCGATATAGTGGCGCAAGCCCTTGCAAATGGAATGGATCAAGCTATCAACATTGTGGACCCTGAGTTGATCACAAAAGACAATCCAGAAGTGTTGGAAGAGCTCTTTAAGCTATCATTGTGCTGCACTCTACCTGATCCTGAACGTCGACCAAATATGAATGAAGTTTTATCTGCACTTGTGAAGCTTAAGACAGCAAAATAG 3168 0.3794 MLSLNLNFWLTIVIVISIVTNAEKTTFEIEIEALNAFKNSITNDPNGIFSDWVETHPHCNWTGISCDKSSKHVTSISLVALQIQGEISPFLGNISNLQVLDLTTNSFFGHVPPQISLCTQLTQLLLVENSLSGSIPHELGNLQNLQYLDLGSNSFNGTLPSSIFNITSLLGIAFNFNKLSGKIPSNIGNLINTIQIVGFGNSFVGSLPVSIGNLVQLETLRLYGNNLNSTIPSSIFKLKSLTHLGLSDNNLEGTISSEVGSLKSLKALTLHLNKFTGTIPSSITNLINLTTLSMSQNLLSGEIPSNLGVLHNLKFLVLNNNFLHGPVPPSITNCTSLVNVSLSFNSLTGKIPEGFSRLPNFTFLSLASNKMSGEIPDDLFNCSNLSTLSLGDNNFSGLVKSGIKNLLNLMRLQLNANAFVGPIPPEIGNLNKLITLSLSENRFSGHIPVELSKLSLLQGLSLHDNVLEGTIPDKLLELKQLTLLLLQENKLVGQIPDSLSNLEMLSYLDLHGNKLNGSIPTSMGKLNRLLMLDLSHNHLTGSIPGDVVARFKDMQMYLNLSYNHFVGSVPAELGMLEMAQAIDVSNNNLSVFSGMDLLQSLNLSRNHLEGEIPTSLSQLKNLSSLDLSQNNLKGTIPEGFANLSNLMQFNFSFNQLEGTVPLTGIFAHMNASSMIGNQALCGTKFLKPCRDNDHSLSKKAIVIIASLGSLAILLLVVLLILFFKRGTKFGKSIKRKDTENHEPDYDAALALKRFSPKELENATGCFSSDYIIGASSLSTVYKGQFEDGQIVAIKRLNLHQFSANTDKIFKREAGTLSQLRHRNLVKILGYAWESGKTKALVLEYMENGNLDSIIHDKEGDQSRWTLSERLGVFVSIASGLDYLHSGYDFPIVHCDLKPSNILLDRDWEAHVSDFGTARILGLHLQDGSALSTSTALQGTIGYFAPETAYLRKVTTKVDVFSFGIIVMEFLTKIRPTGLAEEVGLPTSLRDIVAQALANGMDQAINIVDPELITKDNPEVLEELFKLSLCCTLPDPERRPNMNEVLSALVKLKTAK 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01287 1055 ProSiteProfiles Protein kinase domain profile. 766 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01287 1055 SUPERFAMILY RNI-like 328 663 - -
Car06g01287 1055 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Car06g01287 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Car06g01287 1055 PRINTS Leucine-rich repeat signature 529 542 - -
Car06g01287 1055 PRINTS Leucine-rich repeat signature 619 632 - -
Car06g01287 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 291 590 - -
Car06g01287 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 118 - -
Car06g01287 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 562 1051 - -
Car06g01287 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 122 185 - -
Car06g01287 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 118 - -
Car06g01287 1055 SMART LRR_typ_2 358 382 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 286 310 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 214 238 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 478 502 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 526 550 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 94 118 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 142 166 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 430 454 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 643 668 IPR003591 -
Car06g01287 1055 SMART LRR_typ_2 619 642 IPR003591 -
Car06g01287 1055 SUPERFAMILY Protein kinase-like (PK-like) 745 1048 IPR011009 -
Car06g01287 1055 SMART serkin_6 766 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01287 1055 Gene3D Transferase(Phosphotransferase) domain 1 845 1055 - -
Car06g01287 1055 SUPERFAMILY L domain-like 54 376 - -
Car06g01287 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 562 1051 - -
Car06g01287 1055 Gene3D Phosphorylase Kinase; domain 1 727 844 - -
Car06g01287 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 179 301 - -
Car06g01287 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 291 590 - -
Car06g01287 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 122 185 - -
Car06g01287 1055 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Car06g01287 1055 SMART LRR_sd22_2 310 342 - -
Car06g01287 1055 SMART LRR_sd22_2 478 504 - -
Car06g01287 1055 SMART LRR_sd22_2 142 168 - -
Car06g01287 1055 SMART LRR_sd22_2 619 645 - -
Car06g01287 1055 SMART LRR_sd22_2 238 261 - -
Car06g01287 1055 SMART LRR_sd22_2 286 309 - -
Car06g01287 1055 Gene3D Ribonuclease Inhibitor 27 195 IPR032675 -
Car06g01287 1055 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 179 301 - -
Car06g01287 1055 CDD STKc_IRAK 772 1051 - -
Car06g01287 1055 Pfam Protein kinase domain 770 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01287 1055 Gene3D Ribonuclease Inhibitor 356 693 IPR032675 -
Car06g01287 1055 Gene3D Ribonuclease Inhibitor 196 355 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01287 Car-Chr6 12719492 12723284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01287 24 1052 Receptor kinase-like Gene Family AT5G46330 47.982 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Car06g01287 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01287 K13420 - gmx:100817960 1359.74