Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01279 ATGGGCCGTAAAAAAATAGATATTAAATTTGTGAGAAATAGGGATTGTAGAAATGTTACATTTTCTAAGAGAAAAAATGGTCTTATTAAAAAAGCAAGTGAGTTATCAATTCTTTGTGGTTCTAGAATTGGTTTGAGTGGTTACACTCCTGGTGGTAACCTTTTTGCTTTTGGTTCTCCAACTTTTGAAGTTGTGACTAATGAGTTTCTCAATGAAGAAAATTATCAATTGGGAGGTGAATCATCAAAGCAAATTGGTGGATCTCCCCAAATTGGAAGGATCAATGAGCTCAACCAAAGGCTTAATGATTTGAACCAAGAGTTGATGGAAAAAGGTAAAGACCCTATTGATCTTGATGCTTATGATTTTGAAGGGCTTCAAAAAGTGAATGATTCTTTGAAAGTGCTTCAAAGTGAAATTGATGCAGCTGCATCTTTGCTTGCCCTTGCAAATAGACCTATCCAGTTTATCAAAATAAATCATGGCAATAAATGGGGAAAACCCAAATTGATCAAAATTAAATACTAG 528 0.3409 MGRKKIDIKFVRNRDCRNVTFSKRKNGLIKKASELSILCGSRIGLSGYTPGGNLFAFGSPTFEVVTNEFLNEENYQLGGESSKQIGGSPQIGRINELNQRLNDLNQELMEKGKDPIDLDAYDFEGLQKVNDSLKVLQSEIDAAASLLALANRPIQFIKINHGNKWGKPKLIKIKY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01279 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 PANTHER MADS BOX PROTEIN 2 157 - -
Car06g01279 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 157 - -
Car06g01279 175 CDD MADS 2 60 - -
Car06g01279 175 Coils Coil 126 146 - -
Car06g01279 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 Coils Coil 91 114 - -
Car06g01279 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car06g01279 175 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Car06g01279 175 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01279 Car-Chr6 12665204 12665889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01279 1 136 Type I MADS-box Gene Family AT2G34440 35.766 7.29e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g01279 SRF-TF 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01279 - - cam:101509856 351.673