LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g01279	ATGGGCCGTAAAAAAATAGATATTAAATTTGTGAGAAATAGGGATTGTAGAAATGTTACATTTTCTAAGAGAAAAAATGGTCTTATTAAAAAAGCAAGTGAGTTATCAATTCTTTGTGGTTCTAGAATTGGTTTGAGTGGTTACACTCCTGGTGGTAACCTTTTTGCTTTTGGTTCTCCAACTTTTGAAGTTGTGACTAATGAGTTTCTCAATGAAGAAAATTATCAATTGGGAGGTGAATCATCAAAGCAAATTGGTGGATCTCCCCAAATTGGAAGGATCAATGAGCTCAACCAAAGGCTTAATGATTTGAACCAAGAGTTGATGGAAAAAGGTAAAGACCCTATTGATCTTGATGCTTATGATTTTGAAGGGCTTCAAAAAGTGAATGATTCTTTGAAAGTGCTTCAAAGTGAAATTGATGCAGCTGCATCTTTGCTTGCCCTTGCAAATAGACCTATCCAGTTTATCAAAATAAATCATGGCAATAAATGGGGAAAACCCAAATTGATCAAAATTAAATACTAG	528	0.3409	MGRKKIDIKFVRNRDCRNVTFSKRKNGLIKKASELSILCGSRIGLSGYTPGGNLFAFGSPTFEVVTNEFLNEENYQLGGESSKQIGGSPQIGRINELNQRLNDLNQELMEKGKDPIDLDAYDFEGLQKVNDSLKVLQSEIDAAASLLALANRPIQFIKINHGNKWGKPKLIKIKY	175

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car06g01279	175	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
Car06g01279	175	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
Car06g01279	175	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
Car06g01279	175	PANTHER	MADS BOX PROTEIN	2	157	-	-
Car06g01279	175	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL29	2	157	-	-
Car06g01279	175	CDD	MADS	2	60	-	-
Car06g01279	175	Coils	Coil	126	146	-	-
Car06g01279	175	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
Car06g01279	175	Coils	Coil	91	114	-	-
Car06g01279	175	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	57	IPR002100	GO:0003677\|GO:0046983

Showing 1 to 10 of 13 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g01279	Car-Chr6	12665204	12665889	Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g01279	1	136	Type I MADS-box Gene Family	AT2G34440	35.766	7.29e-24	90.5

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Car06g01279		SRF-TF	4e-17	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g01279	-		-	cam:101509856	351.673

Showing 1 to 1 of 1 entries