Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01278 ATGAAGAAGATTGAGAGAAAGAAAGATCTTTTCGTAGCACTTTCAAAGCGAAAGAATGGCATTCACAAAAAGTCCTACGAGTTATCAACACTTTGTGGTGATTTTGTTGATATTCTTATGTTATGTCCAACAATAAAACCCTTTTGTTATGTAGAGCCTTCTTTGAATAGAAAAATAATGAACTTTTGGATCAAACATATATTGAGGAAGCACAAGGATATGTTTATGTTGGACTTTGCAAAGCGAAGAATCTTACCAAGGCTTGACATGTCGCGAATCCTCTTGAAAGAGAGGGATGCCTTCGGGAACGCGGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA 363 0.3967 MKKIERKKDLFVALSKRKNGIHKKSYELSTLCGDFVDILMLCPTIKPFCYVEPSLNRKIMNFWIKHILRKHKDMFMLDFAKRRILPRLDMSRILLKERDAFGNADRWCMAVVSSCRKVLG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01278 120 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Car06g01278 120 PANTHER AGAMOUS-LIKE 57 1 74 - -
Car06g01278 120 PANTHER MADS BOX PROTEIN 1 74 - -
Car06g01278 120 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Car06g01278 120 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Car06g01278 120 Gene3D - 7 73 IPR036879 GO:0003677|GO:0046983
Car06g01278 120 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 49 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01278 1 55 Type I MADS-box Gene Family AT2G24840 41.818 3.19e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g01278 SRF-TF 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01278 - K12412 ccaj:109813207 59.6918