Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g01278 | ATGAAGAAGATTGAGAGAAAGAAAGATCTTTTCGTAGCACTTTCAAAGCGAAAGAATGGCATTCACAAAAAGTCCTACGAGTTATCAACACTTTGTGGTGATTTTGTTGATATTCTTATGTTATGTCCAACAATAAAACCCTTTTGTTATGTAGAGCCTTCTTTGAATAGAAAAATAATGAACTTTTGGATCAAACATATATTGAGGAAGCACAAGGATATGTTTATGTTGGACTTTGCAAAGCGAAGAATCTTACCAAGGCTTGACATGTCGCGAATCCTCTTGAAAGAGAGGGATGCCTTCGGGAACGCGGACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA | 363 | 0.3967 | MKKIERKKDLFVALSKRKNGIHKKSYELSTLCGDFVDILMLCPTIKPFCYVEPSLNRKIMNFWIKHILRKHKDMFMLDFAKRRILPRLDMSRILLKERDAFGNADRWCMAVVSSCRKVLG | 120 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g01278 | 120 | ProSiteProfiles | MADS-box domain profile. | 1 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g01278 | 120 | PANTHER | AGAMOUS-LIKE 57 | 1 | 74 | - | - | |
Car06g01278 | 120 | PANTHER | MADS BOX PROTEIN | 1 | 74 | - | - | |
Car06g01278 | 120 | SMART | madsneu2 | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g01278 | 120 | SUPERFAMILY | SRF-like | 1 | 70 | IPR036879 | GO:0003677|GO:0046983 | |
Car06g01278 | 120 | Gene3D | - | 7 | 73 | IPR036879 | GO:0003677|GO:0046983 | |
Car06g01278 | 120 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 49 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car06g01278 | 1 | 55 | Type I MADS-box Gene Family | AT2G24840 | 41.818 | 3.19e-08 | 48.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Car06g01278 | SRF-TF | 7.5e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g01278 | - | K12412 | ccaj:109813207 | 59.6918 |