Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01230 ATGAGTTCAGGTTCAGGAGACAGGCAAAATATGCATGATCAAACTGATTGCTTTGATCCCAACACAATGGCAGAAGATGTAAACTTTTCTCAAATTCTGCAAAATCAAACCACAAACAGCAATAATAGCCTTGAAGAGAATTTGAGGCCTTCTATGAATGAAGTTTCCACTTTGACAAATGGACTCACTCTCTCATCCATAGACATTGAACAACAAAATCTTGGTTTGAACATAGGGAACTCCTACAACAACAACATGGATAACCATTTGGTGCAAGAAGTGTATCAGCACTCAACTTGGGACTCTAGTGTTCAAGAAATGCAAGATATTTGCTATGCTAATCACCAAGAACACCACCAACTACATGAACAACATTTTCAACAAATTGTTGAGGCACAAAACTGCAGCCAAAGCTACAATCCCTCTTCTATACTTGACCCTCCTTACCCTTCACCAGATCTATTAAACCTTCTCCACTTACCTAGATGTTCAGCTTCATCTTTGCTCACAAATCCATCCAACATTTGCATCACAAACTCAACTCAGAAAACACCCAATTTTCAGAGTTCAATGAATTTTCTTGGTGACCTTCCAATAGGATCAGACAACATAAGTGGATCCTCAGTTCTTTACGATCCTCTTTTTCATTTGAACCTTCCTCCACAGCCTCCAGCCCTCAGAGAATTGTTTCAATCTCTCCCTCGAGGATATAGTTTGCCGACGAGCTCAAGGAATGGTTCTCTTTTTGGTGGAGGGGATGAGATGGAGGGAGATGGTAGCCAGCTTGATATGGGAGTGCTGGAATTCAATAGGGTCACTGCTTCTGTTGGCAAAGGAAGGAGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAATACAAAATTTTGAGGAGTCTCATCCCAAATCCCACCAAGGTTGATAGAGCATCAGTGGTGGGAGATGCTATTGAGTATATAAGAGAACTAGTTAGAACAAAGAATGAGCTGACATTATTGGTGGAGAGGAAAAGACATGGGAGGGAAATGAGCAAGAGACTTAAAACTGAAGATGATGCTGCAGAAAGCTGTAATATAAAGCCTTTTGGTGATGCAGATGGAAGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATTGATAATGATGTTACGATCAAACTGATTCAGAGGAAGAAGGTTAATTGCTTGCTGTTTGTTTCCAAGGTTTTGGATGAACTTCAGTTGGAACTTTGCCATGTTGCAGGTGGACTTGTTGGTGAATATTTTAGCTTCTTGCTCAATAGCAAGGTAATTGAAGGTTCATCAGTATATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTTTGGACACTCAATATGCAGCAGTTGTTCCAAATTTAAGTAGGCTATAG 1443 0.4054 MSSGSGDRQNMHDQTDCFDPNTMAEDVNFSQILQNQTTNSNNSLEENLRPSMNEVSTLTNGLTLSSIDIEQQNLGLNIGNSYNNNMDNHLVQEVYQHSTWDSSVQEMQDICYANHQEHHQLHEQHFQQIVEAQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPSNICITNSTQKTPNFQSSMNFLGDLPIGSDNISGSSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTSSRNGSLFGGGDEMEGDGSQLDMGVLEFNRVTASVGKGRRGKATKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIRELVRTKNELTLLVERKRHGREMSKRLKTEDDAAESCNIKPFGDADGSIRTSWLQRKSKDSEVDVRIIDNDVTIKLIQRKKVNCLLFVSKVLDELQLELCHVAGGLVGEYFSFLLNSKVIEGSSVYASAIANRVIDVLDTQYAAVVPNLSRL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01230 480 Pfam Helix-loop-helix DNA-binding domain 285 331 IPR011598 GO:0046983
Car06g01230 480 PANTHER TRANSCRIPTION FACTOR BHLH91 11 473 - -
Car06g01230 480 Gene3D - 278 345 IPR036638 GO:0046983
Car06g01230 480 MobiDBLite consensus disorder prediction 1 21 - -
Car06g01230 480 CDD bHLH_AtMYC1_like 287 353 IPR045896 -
Car06g01230 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Car06g01230 480 SMART finulus 288 337 IPR011598 GO:0046983
Car06g01230 480 MobiDBLite consensus disorder prediction 1 17 - -
Car06g01230 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 349 IPR036638 GO:0046983
Car06g01230 480 PANTHER TRANSCRIPTION FACTOR BHLH91 11 473 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01230 Car-Chr6 12179417 12181912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01230 11 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.378 2.12e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01230 HLH 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01230 - - gmx:100782512 709.523