Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01221 ATGAAGATTTCAACACTTCTTGTAGTAGTTGTGTTCTTTATGTGTTTTATTTCAATGCCACTACTAGTACTTGGCCAAGACAACATAGATAAAGATACAATTTTGAAAGTGCTTTTGGAAGTGAAGAAATCATTTGATAAAGACCCACAAAATGTTTTGAGTGATTGGTCAGAAAATAACACAGATTACTGTAGTTGGAGAGGAGTGTCATGTGGTTTGAACTCTTTAGTTGATGACTCGGTGCATGTGGTGAGTCTTAACCTTTCTGACTCGTCACTCACCGGGTCAATTTCACCATCACTCGGTCGGTTGAAAAACTTGCTCCACCTAGATATTTCTTCCAATTTCCTCACGGGTCACATTCCACGAAATCTCTCTAACCTTGCTTCATTGGAATCTCTGCTTCTCTTTTCTAACCAACTCAGTGGTTCTGTTCCCACTGAGTTTGGCTCGCTCACGAGTCTCCGAGTCATGCGACTCGGTGACAATCCATTAACAGGTATGATTCCCTCGTCTCTTGGGAAATTGTTTAACTTGGTCACTCTTGGACTTGCTTCATGCGAACTCACTGGGTCGATTCCACCTGAACTCGGTCAACTCAGTCTCATGGAGAATCTTCTTCTTCAGGACAACGAGTTAATGGGTCCGATTCCGTCCGAGTTAGGAAACTGCTCAAGCCTCACTGTCTTCACTGCTTCTAACAACAAACTCAATGGGTCAATTCCAAGTGAACTGAGTCAACTAAATAATCTTCAAATTCTCAACCTTGGCAACAATAGCTTATCAGGGGAGATACCGAGTCAACTCGGTGAAATGAGTGAACTCGTTTACCTCAATCTCATGGATAACCAACTTGAAGGTGCAATTCCACCGTCTCTAGCTCAACTGGGTAATCTTCAAAAGCTTGACTTGTCTATGAACAAGCTCAGTGGAGGAATTCCAGATGAGTTTGGCGACATGGGTCAGCTAGGTTACATGGTTTTGTCTGGTAACAACCTTAATAGTGTCATACCAAGAACAATATGTTCCAATGCAACAAGTTTGGAACATTTAATGCTATCACAAAGTGGACTTATTGGTGAGATTCCAGCTGAATTAAGTCAGTGTCAATCACTGAAACAACTTGATTTATCTAACAATTCACTCAATGGTTCCATACCTCTTGAGCTTTATGGGTTGTTAGGGTTAACTGATCTATTGCTCAACAACAATAGTTTGGTTGGTTCAATCTCTCCTTTTATAGGAAACTTCAGCAGCTTGCAAACACTTGCTTTGTATCACAACAATTTGCAGGGTGCTCTTCCTAGAGAGATTGGAATGCTAGGGAAGTTGGAAATTTTATATCTTTATGATAATTGGTTATCGGGTGCTATACCTATGGAGATTGGTAACTGTTCAAGCTTGCAAATGGTTGATTTTTCTGGAAACAGATTCAGTGGGGAAATTCCAATCACTATTGGAAGGCTGAAAAAGTTGAACTTCCTTCACCTTAGACAAAATGAGCTTGTGGGTGAGATTCCTGCCACTTTGGGTAACTGTCATAAAATGAATATCCTTGATTTGGCTGATAATCAGCTCTCTGGAGCAATTCCTGCAACATTTGGATTCCTTGAGTCATTGCAGAAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTTCCTCACCAATTGATAAATGTAGCTAACTTGACCAGAGTGAATCTTTCAAAGAATAGATTGAATGGTAGTCTAGCTGCACTGTGTAGCTCACAATCGTTTCTTTCTTTCGATGTTACGGATAATGAGTTTGCCAGTGAAATTCCATCTCAGCTGGGAAACTCGCCCTCCCTTCAGAGGCTAAGATTAGGCAACAACAAATTTTCTGGTGAAATTCCTAGGACTTTGGGAAAAATCCACGACCTGTCATTGTTAGACCTGTCGGGAAATTCACTCACCGGACCGATACCAGCTGAGCTTTCTTTGTGCAATAAATTAGCTTACATTGATTTAAACAGTAATCTTCTTTTTGGACAAATACCATTTTGGCTTGGAAGTTTGCCTCAGTTGGGAGAGCTTAAGCTCTCCTCCAATAATTTTTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTACTAGTTCTCTCTCTAAATGACAACTCACTCAATGGAAGTCTCCCAACTGATATAGGTGATCTTACATATCTTAATGTCCTTCGACTTGACCGTAATAAGTTCTCTGGACTGATCCCTCCGGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCAGCTATCCAGGAATAGCTTTAATGGTGAGATGCCAATTGAGATTGGAAAACTTCAAAATCTCCAAATCGTTTTAGACCTCAGTTACAATAGTCTCTCAGGTCGCATCCCGGATTCTCTCGGGACTCTATCAAAATTAGAAGCACTTGATCTTTCCCACAATCAACTTACTGGAAAAATCCCCCCacaagttggtgaaatgagtagcttgggaaagcttgatctctcttacaacaaccttcaaggaaaattggacaagcggttcacccgctggccgaatgaggtatttgaaggaaactcaaatctttgTGGAAGCCCTCTCGACCTCTGTAATAGTGATGATACTTCTGGCAGGGAGCAGTCGGGCCTAAGCGAGTCATCGGTAGTGATAATTTCTGTAATTTCAACTTTAGCTGCAATTTCACTATTGATACTGTCGGTAAGAATCTTCTGCAAAAACAAGCAAGAATTTTTAAGGAAAGACAGCAAAATGAGTTATGTCTACTCCTCCTCTTCATCGCACGCACAACGACTACCACTGTTCCAACTAAATGCAGCTGGAAAGAGAGATTTCAGGTGGGAAGATATCATGGATGCAACAAACAATCTAAGTGATGACTTCATGATTGGTTCAGGAGGTTCGGGGAAAATCTACAAAGCTGATTTGGTCACCGGAGAGACGGTTGCTGTCAAGAAGATTTCATCAAAAGATGATTTTCTGTTAAACAAAAGCTTTTTAAGAGAAATTCAGACACTAGGGAGAATAAAGCATAGACATCTGGTGAAGCTAATAGGATTTTGTAGCAGTAGAAACAAAGGAGCAGGTTGGAATCTATTGATATATGAATACATGGAGAATGGAAGTTTATGGGATTGGCTTCATGGGAAATCGGTCAATGCAGGCAAAGTAAAGAACAGTCTTGATTGGGAGACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTACATCATGATTGTGCACCAAATATCATTCACAGAGACATCAAATCCAGCAACATATTGCTAGATTCCAATATGGAAGCACACTTGGGAGATTTTGGACTGGCTAAAGCACTCGTTGAAAGTTATGACTCTAATACCGAGTCAAATTCTTGTTTTGCTGGGTCTTATGGCTACATGGCTCCAGAGTATGCATTCTCGCTGCGGGCGACAGAAAAAAGTGATGTTTACAGCATGGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGACTTTTTTGGAGAAGATATGGACATGGTGAGATGGGTGGAGATGAACATTGATATGCATGGCTCTACCTGTGAGAAACTGATAGATCCTGAACTGAAACCTCTTTTACCTAGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAATGCACAAAAGCTACAACACGGGAGAGACCATCTTCAAGGAAAGTGTGTGATCTTCTCCTTCATGTAATTAGTAATAGAATGATGGACTTCCAGAAGATGAATTTGGATCAATACAAGTAA 3804 0.3941 MKISTLLVVVVFFMCFISMPLLVLGQDNIDKDTILKVLLEVKKSFDKDPQNVLSDWSENNTDYCSWRGVSCGLNSLVDDSVHVVSLNLSDSSLTGSISPSLGRLKNLLHLDISSNFLTGHIPRNLSNLASLESLLLFSNQLSGSVPTEFGSLTSLRVMRLGDNPLTGMIPSSLGKLFNLVTLGLASCELTGSIPPELGQLSLMENLLLQDNELMGPIPSELGNCSSLTVFTASNNKLNGSIPSELSQLNNLQILNLGNNSLSGEIPSQLGEMSELVYLNLMDNQLEGAIPPSLAQLGNLQKLDLSMNKLSGGIPDEFGDMGQLGYMVLSGNNLNSVIPRTICSNATSLEHLMLSQSGLIGEIPAELSQCQSLKQLDLSNNSLNGSIPLELYGLLGLTDLLLNNNSLVGSISPFIGNFSSLQTLALYHNNLQGALPREIGMLGKLEILYLYDNWLSGAIPMEIGNCSSLQMVDFSGNRFSGEIPITIGRLKKLNFLHLRQNELVGEIPATLGNCHKMNILDLADNQLSGAIPATFGFLESLQKLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSLAALCSSQSFLSFDVTDNEFASEIPSQLGNSPSLQRLRLGNNKFSGEIPRTLGKIHDLSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNLLFGQIPFWLGSLPQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPTDIGDLTYLNVLRLDRNKFSGLIPPEIGKLSKLYELQLSRNSFNGEMPIEIGKLQNLQIVLDLSYNSLSGRIPDSLGTLSKLEALDLSHNQLTGKIPPQVGEMSSLGKLDLSYNNLQGKLDKRFTRWPNEVFEGNSNLCGSPLDLCNSDDTSGREQSGLSESSVVIISVISTLAAISLLILSVRIFCKNKQEFLRKDSKMSYVYSSSSSHAQRLPLFQLNAAGKRDFRWEDIMDATNNLSDDFMIGSGGSGKIYKADLVTGETVAVKKISSKDDFLLNKSFLREIQTLGRIKHRHLVKLIGFCSSRNKGAGWNLLIYEYMENGSLWDWLHGKSVNAGKVKNSLDWETRFKIAVGLAQGVEYLHHDCAPNIIHRDIKSSNILLDSNMEAHLGDFGLAKALVESYDSNTESNSCFAGSYGYMAPEYAFSLRATEKSDVYSMGIVLMELVSGKMPTSDFFGEDMDMVRWVEMNIDMHGSTCEKLIDPELKPLLPSEEFAAFQVLEIALQCTKATTRERPSSRKVCDLLLHVISNRMMDFQKMNLDQYK 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01221 1267 PRINTS Leucine-rich repeat signature 372 385 - -
Car06g01221 1267 PRINTS Leucine-rich repeat signature 801 814 - -
Car06g01221 1267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Car06g01221 1267 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 1264 - -
Car06g01221 1267 SUPERFAMILY Protein kinase-like (PK-like) 944 1247 IPR011009 -
Car06g01221 1267 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Car06g01221 1267 Gene3D Transferase(Phosphotransferase) domain 1 1042 1265 - -
Car06g01221 1267 Gene3D Ribonuclease Inhibitor 580 876 IPR032675 -
Car06g01221 1267 ProSiteProfiles Leucine-rich repeat profile. 803 825 IPR001611 GO:0005515
Car06g01221 1267 Pfam Leucine Rich Repeat 250 268 IPR001611 GO:0005515
Car06g01221 1267 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Car06g01221 1267 SMART serkin_6 961 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01221 1267 Gene3D Ribonuclease Inhibitor 512 579 IPR032675 -
Car06g01221 1267 SUPERFAMILY RNI-like 635 869 - -
Car06g01221 1267 Gene3D Phosphorylase Kinase; domain 1 921 1041 - -
Car06g01221 1267 ProSiteProfiles Protein kinase domain profile. 961 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01221 1267 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Car06g01221 1267 Pfam Leucine rich repeat N-terminal domain 37 71 IPR013210 -
Car06g01221 1267 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
Car06g01221 1267 Pfam Leucine rich repeat 516 574 IPR001611 GO:0005515
Car06g01221 1267 Pfam Leucine rich repeat 754 814 IPR001611 GO:0005515
Car06g01221 1267 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 9 1264 - -
Car06g01221 1267 Pfam Protein kinase domain 966 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01221 1267 Gene3D Ribonuclease Inhibitor 34 187 IPR032675 -
Car06g01221 1267 SMART LRR_typ_2 489 513 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 801 823 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 104 127 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 537 561 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 417 441 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 176 200 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 152 175 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 248 272 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 752 776 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 128 151 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 320 344 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 680 704 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 296 319 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 825 856 IPR003591 -
Car06g01221 1267 SMART LRR_typ_2 369 393 IPR003591 -
Car06g01221 1267 SUPERFAMILY L domain-like 301 698 - -
Car06g01221 1267 SUPERFAMILY L domain-like 41 386 - -
Car06g01221 1267 Gene3D Ribonuclease Inhibitor 290 510 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01221 Car-Chr6 12042766 12047454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01221 37 705 Receptor kinase-like Gene Family AT1G17750 37.333 5.75e-102 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car06g01221 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01221 - - gmx:100801889 2006.11